Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-5-Internal Loop pdb1fka1A.n571-609
Source: [PDB-id:chain] 1fka:A (&rarr PDB)
Source: Information STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.30 ANGSTROMS.
Position (575, 605), (583, 599)
Primary structure ('_': anchors) _UGAAAGA_-_GGGAG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
None
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 3 15
4 4 5
5 5 6
6 6 7
7 7 8
8 8 9
9 10 11
10 11 12
11 12 13
12 13 14
13 15 16
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 16 Watson-Crick/Watson-Crick cis
2 5 6 Hoogsteen/O2' ?
3 6 7 Hoogsteen/O2' ?
4 8 11 Watson-Crick/Watson-Crick cis
5 9 10 Watson-Crick/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters