Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'17-Segment pdb1fka1A.i983-1001
Source: [PDB-id:chain] 1fka:A (&rarr PDB)
Source: Information STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.30 ANGSTROMS.
Position (983, 1001)
Primary structure ('_': anchors) _GGUGCCCGCGAGGGAGC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
None
Bases with unusual glycosidic-bond configuration
(Standard: anti)
3: unknown
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 5 6
3 5 17
4 7 8
5 14 15
6 15 16
7 17 18
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 11 12 C/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters