Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-Hairpin pdb1fka1A.e588-594
Source: [PDB-id:chain] 1fka:A (&rarr PDB)
Source: Information STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.30 ANGSTROMS.
Position (588, 594)
Primary structure ('_': anchors) _CUCAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
None
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 4 5
2 5 6
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 3 Watson-Crick/O2' ?
2 1 7 Watson-Crick/Watson-Crick cis
3 2 5 Hoogsteen/Watson-Crick trans
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters