Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'12-Hairpin pdb1fjg1A.e311-324
Source: [PDB-id:chain] 1fjg:A (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.00 ANGSTROMS.
Position (311, 324)
Primary structure ('_': anchors) _ACUGAGACACGG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
5: C2'-exo, 8: C2'-endo, 9: C3'-exo, 10: C4'-exo, 11: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
8: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 2 14
4 3 4
5 4 5
6 6 7
7 8 10
8 10 13
9 13 14
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 14 Watson-Crick/Watson-Crick cis
2 2 10 O2'/Bifurcated ?
3 2 13 Watson-Crick/Watson-Crick cis
4 3 9 Bifurcated/O2' ?
5 3 10 Hoogsteen/Watson-Crick trans
6 4 8 Hoogsteen/Watson-Crick trans
7 5 8 O2'/Watson-Crick ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters