Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'10-Hairpin pdb1fjg1A.e1333-1344
Source: [PDB-id:chain] 1fjg:A (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.00 ANGSTROMS.
Position (1333, 1344)
Primary structure ('_': anchors) _AUCAGCCAUG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C4'-exo, 8: C4'-exo, 9: C2'-endo, 10: C2'-endo, 11: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 5 6
4 6 7
5 9 11
6 11 12
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 12 Watson-Crick/Watson-Crick cis
2 2 11 Watson-Crick/Watson-Crick cis
3 3 4 Bifurcated/O2' ?
4 3 9 Watson-Crick/Watson-Crick trans
5 4 6 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters