Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'14-Hairpin pdb1fje1A.e4-19
Source: [PDB-id:chain] 1fje:A (&rarr PDB)
Source: Information SOLUTION STRUCTURE OF NUCLEOLIN RBD12 IN COMPLEX WITH SNRE RNA
Source: Compound SNRE RNA
Source: Resolution NOT APPLICABLE.
Position (4, 19)
Primary structure ('_': anchors) _GAAAUCCCGAAGUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C4'-exo, 2: C4'-exo, 3: C4'-exo, 6: C1'-exo, 8: O4'-endo, 9: C1'-endo, 10: C1'-endo, 11: C3'-exo, 12: C1'-exo, 13: C1'-exo, 14: C2'-exo, 16: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		6: syn, 9: syn, 10: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 4 ↑
3 3 15 →
4 4 5 ↑
5 5 11 &larr
6 7 8 ↑
7 12 14 →
8 15 16 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 2 C/O2' ?
2 1 16 Watson-Crick/Watson-Crick cis
3 2 15 Hoogsteen/Sugar trans
4 3 14 Watson-Crick/Hoogsteen trans
5 4 11 O2'/Bifurcated ?
6 4 12 Hoogsteen/Hoogsteen trans
7 5 11 O2'/Bifurcated ?
8 7 8 Bifurcated/O2' ?
9 11 12 Hoogsteen/O2' ?
10 13 14 Hoogsteen/Sugar cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters