Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-Hairpin pdb1fir1A.e30-40
Source: [PDB-id:chain] 1fir:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTION PRIMER TRNA(LYS3)
Source: Compound HIV-1 REVERSE TRANSCRIPTION PRIMER TRNA(LYS3)
Source: Resolution 3.30 ANGSTROMS.
Position (30, 40)
Primary structure ('_': anchors) _ACUUUUAAU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		8: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 4 ↑
4 5 6 ↑
5 7 8 ↑
6 8 9 ↑
7 9 10 &larr
8 10 11 →
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis
2 2 10 Watson-Crick/Watson-Crick cis
3 3 9 Watson-Crick/Watson-Crick trans y
4 4 6 O2'/Hoogsteen ?
5 4 7 O2'/Watson-Crick ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters