Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'12-Segment pdb1fg01A.i316-329
Source: [PDB-id:chain] 1fg0:A (&rarr PDB)
Source: Information LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH A 13 BP MINIHELIX- PUROMYCIN COMPOUND
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.00 ANGSTROMS.
Position (316, 329)
Primary structure ('_': anchors) _UAGGGAUAACAG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
6: C2'-endo, 7: C2'-endo, 8: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
2 3 4
3 4 5
4 9 10
5 11 12
6 12 13
7 13 14
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 6 9 O2'/Bifurcated ?
2 6 10 Bifurcated/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters