Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'14-Hairpin pdb1ffk10.e316-331
Source: [PDB-id:chain] 1ffk:0 (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Source: Compound 23S RRNA
Source: Resolution 2.40 ANGSTROMS.
Position (316, 331)
Primary structure ('_': anchors) _GAUACAGGGUGACA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
4: C2'-endo, 5: C2'-endo, 6: C2'-endo, 12: C2'-endo, 13: C3'-exo, 14: C1'-exo, 15: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
2 2 16
3 6 16
4 7 8
5 8 9
6 9 10
7 10 11
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 16 Watson-Crick/Watson-Crick cis
2 2 6 Hoogsteen/Watson-Crick cis y
3 11 15 Hoogsteen/Watson-Crick trans
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters