Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb1feq1A.e5-13
Source: [PDB-id:chain] 1feq:A (&rarr PDB)
Source: Information NMR SOLUTION STRUCTURE OF THE ANTICODON OF TRNA(LYS3) WITH T6A MODIFICATION AT POSITION 37
Source: Compound 5'-R(*GP*CP*AP*GP*AP*CP*UP*UP*UP*UP*(T6A)
Source: Resolution NOT APPLICABLE.
Position (5, 13)
Primary structure ('_': anchors) _CUUUUAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C4'-exo, 2: C4'-exo, 3: C1'-exo, 4: C3'-exo, 5: C3'-exo, 6: C2'-endo, 7: C4'-exo, 8: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		5: syn, 6: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 7 8 ↑
4 8 9 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 4 Watson-Crick/O2' ?
3 2 8 Watson-Crick/Watson-Crick cis y
4 5 7 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters