Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-Hairpin pdb1f6u1B.e7-12
Source: [PDB-id:chain] 1f6u:B (&rarr PDB)
Source: Information NMR STRUCTURE OF THE HIV-1 NUCLEOCAPSID PROTEIN BOUND TO STEM-LOOP SL2 OF THE PSI-RNA PACKAGING SIGNAL. IMPLICATIONS FOR GENOME RECOGNITION
Source: Compound HIV-1 STEM-LOOP SL2 FROM PSI-RNA PACKAGING
Source: Resolution NOT APPLICABLE.
Position (7, 12)
Primary structure ('_': anchors) _GGUG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C3'-exo, 4: C3'-exo, 5: O4'-exo, 6: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 6 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters