Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb1exd1B.e29-37
Source: [PDB-id:chain] 1exd:B (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF A TIGHT-BINDING GLUTAMINE TRNA BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE
Source: Compound GLUTAMINE TRNA APTAMER
Source: Resolution 2.70 ANGSTROMS.
Position (29, 37)
Primary structure ('_': anchors) _UUCUGAU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C2'-exo, 4: O4'-endo, 5: C4'-exo, 6: O4'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 5 7
3 7 8
4 8 9
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 3 7 Hoogsteen/Sugar trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters