Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-4-Internal Loop pdb1etfFA.n1-34
Source: [PDB-id:chain] 1etf:A (&rarr PDB)
Source: Information REV RESPONSE ELEMENT (RRE) RNA COMPLEXED WITH REV PEPTIDE, NMR, MINIMIZED AVERAGE STRUCTURE
Source: Compound REV RESPONSE ELEMENT RNA
FLIPPED INTERNAL
Source: Resolution NOT APPLICABLE.
Position (4, 31), (9, 25)
Primary structure ('_': anchors) _GUACA_-_UGGG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		5: C2'-endo, 6: C2'-endo, 8: C4'-exo, 9: C2'-endo, 10: C4'-exo, 11: C2'-endo, 12: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 11 →
3 3 4 ↑
4 4 6 →
5 6 7 &larr
6 8 9 ↑
7 11 12 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 3 11 Watson-Crick/Watson-Crick cis
3 4 10 Watson-Crick/Watson-Crick cis
4 6 9 Watson-Crick/Bifurcated trans y
5 7 8 Watson-Crick/Watson-Crick cis
6 10 11 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters