Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-5-Internal Loop pdb1etf1A.n9-25
Source: [PDB-id:chain] 1etf:A (&rarr PDB)
Source: Information REV RESPONSE ELEMENT (RRE) RNA COMPLEXED WITH REV PEPTIDE, NMR, MINIMIZED AVERAGE STRUCTURE
Source: Compound REV RESPONSE ELEMENT RNA
Source: Resolution NOT APPLICABLE.
Position (4, 31), (9, 25)
Primary structure ('_': anchors) _UGGG_-_GUACA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C4'-exo, 3: C2'-endo, 4: C4'-exo, 5: C2'-endo, 6: C4'-exo, 8: C2'-endo, 9: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3 ↑
2 3 12 →
3 5 6 ↑
4 7 8 &larr
5 8 10 →
6 10 11 ↑
7 12 13 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 3 4 Hoogsteen/O2' ?
3 3 11 Watson-Crick/Watson-Crick cis
4 4 10 Watson-Crick/Watson-Crick cis
5 5 8 Watson-Crick/Bifurcated trans y
6 6 7 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters