Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-Hairpin pdb1esh1A.e5-9
Source: [PDB-id:chain] 1esh:A (&rarr PDB)
Source: Information THE SOLUTION STRUCTURE OF THE STEM LOOP C 5'AUA3' TRILOOP OF BROME MOSAIC VIRUS (+) STRAND RNA
Source: Compound RNA (5'-
Source: Resolution NOT APPLICABLE.
Position (5, 9)
Primary structure ('_': anchors) _AUA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C4'-exo, 2: C2'-endo, 3: C2'-endo, 4: C1'-exo, 5: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
4: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 4 5
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 5 Watson-Crick/Watson-Crick cis
2 2 4 Bifurcated/O2' trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters