Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-Hairpin pdb1efw1C.e13-23
Source: [PDB-id:chain] 1efw:C (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF ASPARTYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED TO TRNAASP FROM ESCHERICHIA COLI
Source: Compound ASPARTYL-TRNA
Source: Resolution 3.00 ANGSTROMS.
Position (13, 23)
Primary structure ('_': anchors) _AGUCGGUUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C2'-endo, 5: C3'-exo, 6: C2'-endo, 7: C2'-endo, 9: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		4: syn, 5: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3 ↑
2 2 11 →
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis y
2 2 10 Sugar/Watson-Crick cis y
3 10 11 C/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters