Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-3-Internal Loop pdb1e4p1A.n8-17
Source: [PDB-id:chain] 1e4p:A (&rarr PDB)
Source: Information STRUCTURE OF THE RIBOZYME SUBSTRATE HAIRPIN OF NEUROSPORA VS RNA. A CLOSE LOOK AT THE CLEAVAGE SITE
Source: Compound RNA (5'-
Source: Resolution NOT APPLICABLE.
Position (4, 21), (8, 17)
Primary structure ('_': anchors) _GAA_-_CGA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
8: C2'-endo, 10: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 3 4
3 3 9
4 4 5
5 6 7
6 7 8
7 9 10
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 10 Watson-Crick/Watson-Crick cis
2 2 9 Hoogsteen/Sugar trans
3 3 8 Sugar/Hoogsteen trans y
4 4 7 Watson-Crick/Watson-Crick cis y
5 5 6 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters