Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-6-Internal Loop pdb1cq5FA.n1-43
Source: [PDB-id:chain] 1cq5:A (&rarr PDB)
Source: Information NMR STRUCTURE OF SRP RNA DOMAIN IV
Source: Compound SRP RNA DOMAIN IV
FLIPPED INTERNAL
Source: Resolution NOT APPLICABLE.
Position (5, 39), (12, 35)
Primary structure ('_': anchors) _AAG_-_UUACCA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		7: C3'-exo, 8: C2'-endo, 10: C2'-exo, 11: C1'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		7: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 9 →
4 4 5 ↑
5 6 7 ↑
6 10 11 →
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 2 9 Bifurcated/O2' ?
3 2 10 Watson-Crick/O2' ?
4 2 12 Hoogsteen/Watson-Crick trans y
5 3 4 C/O2' ?
6 4 7 Sugar/Hoogsteen trans y
7 4 9 O2'/Bifurcated ?
8 5 6 Watson-Crick/Watson-Crick cis
9 7 8 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters