Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-Segment pdb1cq51A.i5-12
Source: [PDB-id:chain] 1cq5:A (&rarr PDB)
Source: Information NMR STRUCTURE OF SRP RNA DOMAIN IV
Source: Compound SRP RNA DOMAIN IV
Source: Resolution NOT APPLICABLE.
Position (5, 12)
Primary structure ('_': anchors) _UUACCA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C1'-exo, 4: C2'-exo, 6: C2'-endo, 7: C3'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
7: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4
2 7 8
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 6 7 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters