Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-8-Internal Loop pdb1c2x1C.n31-51
Source: [PDB-id:chain] 1c2x:C (&rarr PDB)
Source: Information 5S RRNA STRUCTURE FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP AT 7.5 ANGSTROMS RESOLUTION
Source: Compound 5S RIBOSOMAL RNA
Source: Resolution 7.50 ANGSTROMS.
Position (23, 60), (31, 51)
Primary structure ('_': anchors) _GUCCCAC_-_AAGUGAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		16: syn
Tertiary structure: Stacked bases None
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 19 Watson-Crick/Watson-Crick cis
2 2 3 Sugar/Sugar cis y
3 2 15 O2'/C ?
4 3 9 O2'/Watson-Crick ?
5 3 19 Bifurcated/O2' ?
6 9 10 Watson-Crick/Watson-Crick cis
7 9 17 C/O2' ?
8 10 12 Hoogsteen/O2' ?
9 10 16 O2'/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters