Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-Hairpin pdb1c2x1C.e85-91
Source: [PDB-id:chain] 1c2x:C (&rarr PDB)
Source: Information 5S RRNA STRUCTURE FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP AT 7.5 ANGSTROMS RESOLUTION
Source: Compound 5S RIBOSOMAL RNA
Source: Resolution 7.50 ANGSTROMS.
Position (85, 91)
Primary structure ('_': anchors) _GUCUC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C4'-exo, 4: C2'-endo, 6: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 7 Watson-Crick/Watson-Crick cis
2 2 6 Watson-Crick/Bifurcated cis
3 5 6 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters