Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-Segment pdb1c2w1B.i2882-2888
Source: [PDB-id:chain] 1c2w:B (&rarr PDB)
Source: Information 23S RRNA STRUCTURE FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP AT 7.5 ANGSTROMS RESOLUTION
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 7.50 ANGSTROMS.
Position (2882, 2888)
Primary structure ('_': anchors) _AUGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
None
Bases with unusual glycosidic-bond configuration
(Standard: anti)
2: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 6
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 5 O2'/Hoogsteen ?
2 2 5 O2'/Watson-Crick ?
3 3 6 Hoogsteen/O2' ?
4 3 7 Hoogsteen/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters