Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'12-Segment pdb1c2w1B.i1138-1151
Source: [PDB-id:chain] 1c2w:B (&rarr PDB)
Source: Information 23S RRNA STRUCTURE FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP AT 7.5 ANGSTROMS RESOLUTION
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 7.50 ANGSTROMS.
Position (1138, 1151)
Primary structure ('_': anchors) _GCUAAACCAUGC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
None
Bases with unusual glycosidic-bond configuration
(Standard: anti)
5: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 6 7
2 7 8
3 10 11
4 12 13
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 2 Hoogsteen/O2' ?
2 5 6 C/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters