Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-Hairpin pdb1c2w1B.e382-392
Source: [PDB-id:chain] 1c2w:B (&rarr PDB)
Source: Information 23S RRNA STRUCTURE FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP AT 7.5 ANGSTROMS RESOLUTION
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 7.50 ANGSTROMS.
Position (382, 392)
Primary structure ('_': anchors) _CACGUGGUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		3: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 5 6 ↑
2 7 8 ↑
3 8 9 ↑
4 9 10 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 2 O2'/Watson-Crick ?
2 1 11 Watson-Crick/Watson-Crick cis
3 2 5 O2'/Bifurcated ?
4 2 6 Hoogsteen/Watson-Crick cis y
5 2 10 Bifurcated/O2' ?
6 3 10 Watson-Crick/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters