Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-Hairpin pdb1bzu1A.e4-14
Source: [PDB-id:chain] 1bzu:A (&rarr PDB)
Source: Information STABILIZATION OF THE ANTICODON STEM-LOOP OF TRNALYS, 3 BY AN A+C BASE PAIR AND BY PSEUDOURIDINE, NMR, 1 STRUCTURE
Source: Compound TRNA
Source: Resolution NOT APPLICABLE.
Position (4, 14)
Primary structure ('_': anchors) _ACUUUUAAU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
4: C4'-exo, 5: O4'-endo, 6: C1'-exo, 7: O4'-endo, 8: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 8 9
4 9 10 &larr
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis
2 2 10 Watson-Crick/Watson-Crick cis
3 3 9 Hoogsteen/Watson-Crick trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters