Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-Hairpin pdb1bn01A.e8-13
Source: [PDB-id:chain] 1bn0:A (&rarr PDB)
Source: Information SL3 HAIRPIN FROM THE PACKAGING SIGNAL OF HIV-1, NMR, 11 STRUCTURES
Source: Compound SL3 RNA HAIRPIN
Source: Resolution NOT APPLICABLE.
Position (8, 13)
Primary structure ('_': anchors) _GGAG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C4'-exo, 3: C2'-endo, 4: O4'-endo, 5: C2'-exo, 6: C1'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
3: syn, 4: syn
Tertiary structure: Stacked bases None
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 6 Watson-Crick/Watson-Crick cis
2 2 4 Hoogsteen/Watson-Crick cis y
3 4 6 O2'/Sugar ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters