Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-1-Internal Loop pdb1audFB.n7-18
Source: [PDB-id:chain] 1aud:B (&rarr PDB)
Source: Information U1A-UTRRNA, NMR, 31 STRUCTURES
Source: Compound RNA 3UTR
FLIPPED INTERNAL
Source: Resolution NOT APPLICABLE.
Position (5, 26), (7, 18)
Primary structure ('_': anchors) _AUUGCAC_-_A_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C2'-exo, 4: C2'-endo, 6: C2'-endo, 10: O4'-endo, 11: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
2 7 8
3 11 12
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 12 Watson-Crick/Watson-Crick cis y
2 9 10 Watson-Crick/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters