Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb1asz1R.e52-60
Source: [PDB-id:chain] 1asz:R (&rarr PDB)
Source: Information THE ACTIVE SITE OF YEAST ASPARTYL-TRNA SYNTHETASE: STRUCTURAL AND FUNCTIONAL ASPECTS OF THE AMINOACYLATION REACTION
Source: Compound T-RNA (75-MER)
Source: Resolution 3.00 ANGSTROMS.
Position (52, 60)
Primary structure ('_': anchors) _UUCAAUU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		6: C2'-endo, 8: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		6: syn, 8: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 &larr
3 4 5 ↑
4 6 9 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 6 Hoogsteen/Watson-Crick trans
3 3 5 O2'/Hoogsteen ?
4 3 6 O2'/Watson-Crick ?
5 6 8 Hoogsteen/Sugar trans y
6 8 9 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters