Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-Hairpin pdb1aq31R.e6-11
Source: [PDB-id:chain] 1aq3:R (&rarr PDB)
Source: Information BACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEX
Source: Compound RNA (5'-
Source: Resolution 2.80 ANGSTROMS.
Position (6, 11)
Primary structure ('_': anchors) _AUUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C2'-endo, 4: C2'-endo, 5: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 4 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 6 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters