Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'1-4-Internal Loop pdb1anrFA.n3-27
Source: [PDB-id:chain] 1anr:A (&rarr PDB)
Source: Information CIS-ACTING RNA REGULATORY ELEMENT (HIV-1 TAR), NMR, 20 STRUCTURES
Source: Compound RNA REGULATORY ELEMENT TAR
FLIPPED INTERNAL
Source: Resolution NOT APPLICABLE.
Position (5, 25), (10, 23)
Primary structure ('_': anchors) _U_-_AUCU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C2'-exo, 6: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 7 8
2 8 9
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 8 Watson-Crick/Bifurcated cis y
3 3 4 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters