Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-Hairpin pdb1a601A.e20-30
Source: [PDB-id:chain] 1a60:A (&rarr PDB)
Source: Information NMR STRUCTURE OF A CLASSICAL PSEUDOKNOT: INTERPLAY OF SINGLE-AND DOUBLE-STRANDED RNA, 24 STRUCTURES
Source: Compound TYMV PSEUDOKNOT
Source: Resolution NOT APPLICABLE.
Position (20, 30)
Primary structure ('_': anchors) _CUUUUCCGA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C2'-endo, 5: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 6 7 ↑
2 7 8 ↑
3 9 10 ↑
4 10 11 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis
2 3 5 O2'/Hoogsteen ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters