Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(010)-Hairpin cluster 122 (cutoff=3.0 Å)
Cluster size 118 structure(s)
Representative structure 1vqp:0 (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence NNNNNNDNBN
Cluster members
ACCCGCGAGG
1yl3:A, 1243-1254, 2b66:A, 1243-1254, 2b9n:A, 1243-1254, 2b9p:A, 1243-1254, 2hgj:A, 1243-1254, 2hgq:A, 1243-1254, 2hgu:A, 1243-1254
AGUUAAUACC
1vs5:A, 456-467, 1vs7:A, 456-467, 2avy:A, 456-467, 2aw7:A, 456-467, 2i2p:A, 456-467, 2i2u:A, 456-467, 2qal:A, 456-467, 2qan:A, 456-467, 2qb9:A, 456-467, 2qbb:A, 456-467, 2qbd:A, 456-467, 2qbf:A, 456-467, 2qbh:A, 456-467, 2qbj:A, 456-467, 2qou:A, 456-467, 2qow:A, 456-467, 2qoy:A, 456-467, 2qp0:A, 456-467, 2z4k:A, 456-467, 2z4m:A, 456-467, 3df1:A, 456-467, 3df3:A, 456-467
AUAGCAAUGU
1y69:0, 2741-2752
CCCCUUGGGG
2j00:A, 179-190, 2j02:A, 179-190
CGCUUAUGCG
2vhn:B, 1153-1164
CGCUUUUGCG
2hgq:A, 152-163
CUGAAGAAGG
1j5a:A, 2426-2437, 1jzx:A, 2426-2437, 1jzy:A, 2426-2437, 1jzz:A, 2426-2437, 1k01:A, 2426-2437
GAGGUAACGA
1ffk:0, 2686-2697, 1jj2:0, 2737-2748, 1k73:A, 2737-2748, 1k8a:A, 2737-2748, 1k9m:A, 2737-2748, 1kc8:A, 2737-2748, 1kd1:A, 2737-2748, 1kqs:0, 2737-2748, 1m1k:A, 2737-2748, 1m90:A, 2737-2748, 1n8r:A, 2737-2748, 1nji:A, 2737-2748, 1q7y:A, 2737-2748, 1q81:A, 2737-2748, 1q82:A, 2737-2748, 1q86:A, 2737-2748, 1qvf:0, 2737-2748, 1qvg:0, 2737-2748, 1s1i:3, 3053-3064, 1s72:0, 2737-2748, 1vq4:0, 2737-2748, 1vq5:0, 2737-2748, 1vq6:0, 2737-2748, 1vq7:0, 2737-2748, 1vq8:0, 2737-2748, 1vq9:0, 2737-2748, 1vqk:0, 2737-2748, 1vql:0, 2737-2748, 1vqm:0, 2737-2748, 1vqn:0, 2737-2748, 1vqo:0, 2737-2748, 1vqp:0, 2737-2748, 1w2b:0, 2737-2748, 1yhq:0, 2737-2748, 1yi2:0, 2737-2748, 1yij:0, 2737-2748, 1yit:0, 2737-2748, 1yj9:0, 2737-2748, 1yjn:0, 2737-2748, 1yjw:0, 2737-2748, 2go5:9, 49-60, 2otj:0, 2737-2748, 2otl:0, 2737-2748, 2qa4:0, 2742-2753, 2qex:0, 2737-2748, 3cc2:0, 2737-2748, 3cc4:0, 2737-2748, 3cc7:0, 2737-2748, 3cce:0, 2737-2748, 3ccj:0, 2737-2748, 3ccl:0, 2737-2748, 3ccm:0, 2737-2748, 3ccq:0, 2737-2748, 3ccr:0, 2737-2748, 3ccs:0, 2737-2748, 3ccu:0, 2737-2748, 3ccv:0, 2737-2748, 3cd6:0, 2737-2748, 3cma:0, 2737-2748, 3cme:0, 2737-2748, 3cpw:0, 2737-2748
GCAGCAAUGC
2gya:0, 2691-2702, 2gyc:0, 2691-2702
GCAGCGAUGC
2vhm:B, 2800-2811, 2vhn:B, 2800-2811
GGGGAAACUC
1voq:A, 150-161, 1vos:A, 150-161, 1vov:A, 150-161, 1vox:A, 150-161, 1voz:A, 150-161
GGUGCAAGCU
1nkw:0, 1787-1798, 1p9x:0, 1762-1773, 2o45:A, 1784-1795, 2ogm:0, 1787-1798
GUAAAGAUGC
1z58:2, 1934-1945
UAACCGGGGA
2gya:0, 549-560, 2gyc:0, 549-560
UAUUGAGGUA
2o43:A, 786-797
UCGUACAAGA
3ccr:0, 1885-1896