Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(009)-Hairpin cluster 668 (cutoff=3.0 Å)
Cluster size 98 structure(s)
Representative structure 2qbk:B (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence DWDNNKNHN
Cluster members
AUUAGAUAC
1i95:A, 768-778, 2qnh:y, 765-775
GAAUCCAUA
1vs6:B, 158-168, 1vs8:B, 158-168, 2aw4:B, 158-168, 2awb:B, 158-168, 2i2t:B, 158-168, 2i2v:B, 158-168, 2j28:B, 158-168, 2qam:B, 158-168, 2qao:B, 158-168, 2qba:B, 158-168, 2qbc:B, 158-168, 2qbe:B, 158-168, 2qbg:B, 158-168, 2qbi:B, 158-168, 2qbk:B, 158-168, 2qov:B, 158-168, 2qox:B, 158-168, 2qoz:B, 158-168, 2qp1:B, 158-168, 2z4l:B, 158-168, 2z4n:B, 158-168, 3bbx:B, 158-168, 3df2:B, 158-168, 3df4:B, 158-168
GAAUCCAUG
3bbo:A, 142-152
GUGAGAGUC
1xbp:0, 297-307
GUUCGACUC
2czj:H, 42-52
GUUGGAAAU
2d3o:0, 2216-2226, 3cf5:X, 2106-2116
UAACUAUAA
1vs6:B, 1894-1904, 1vs8:B, 1894-1904, 1vsa:w, 1910-1920, 1vsp:w, 1910-1920, 2aw4:B, 1894-1904, 2awb:B, 1894-1904, 2b66:A, 1910-1920, 2b9n:A, 1910-1920, 2b9p:A, 1910-1920, 2i2t:B, 1894-1904, 2i2v:B, 1894-1904, 2j01:A, 1827-1837, 2j03:A, 1827-1837, 2j28:B, 1894-1904, 2jl6:A, 1906-1916, 2jl8:A, 1906-1916, 2qam:B, 1894-1904, 2qao:B, 1894-1904, 2qba:B, 1894-1904, 2qbc:B, 1894-1904, 2qbg:B, 1894-1904, 2qbi:B, 1894-1904, 2qbk:B, 1894-1904, 2qov:B, 1894-1904, 2qox:B, 1894-1904, 2qoz:B, 1894-1904, 2qp1:B, 1894-1904, 2v47:A, 1827-1837, 2v49:A, 1827-1837, 2z4l:B, 1894-1904, 2z4n:B, 1894-1904, 3bbx:B, 1987-1997, 3d5b:A, 1905-1915, 3d5d:A, 1905-1915, 3df2:B, 1894-1904, 3df4:B, 1894-1904
UUAGAAGCA
1c04:E, 14-24, 1c2w:B, 1064-1074, 1qa6:C, 14-24, 1qa6:D, 14-24, 1vs6:B, 1048-1058, 1vs8:B, 1048-1058, 1w2b:0, 1137-1147, 2aw4:B, 1048-1058, 2awb:B, 1048-1058, 2gya:0, 991-1001, 2gyc:0, 991-1001, 2i2t:B, 1048-1058, 2i2v:B, 1048-1058, 2j28:B, 1048-1058, 2jq7:B, 14-24, 2qa4:0, 1139-1149, 2qam:B, 1048-1058, 2qba:B, 1048-1058, 2qbc:B, 1048-1058, 2qbe:B, 1048-1058, 2qbg:B, 1048-1058, 2qbi:B, 1048-1058, 2qbk:B, 1048-1058, 2qex:0, 1137-1147, 2qov:B, 1048-1058, 2z4l:B, 1048-1058, 2zjq:X, 987-997, 3bbx:B, 1126-1136, 3cf5:X, 987-997, 3deg:G, 22-32, 3df2:B, 1048-1058