Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(009)-Hairpin cluster 366 (cutoff=2.5 Å)
Cluster size 43 structure(s)
Representative structure 1y69:0 (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence VNNDNNVVB
Cluster members
ACUUUUAAU
1bzt:A, 4-14
CCGACGAGG
1ibk:A, 446-456
CGAGACGAG
3bbo:C, 11-21
CGCUUCGCG
1vor:B, 1678-1688, 1vou:B, 1678-1688, 1vow:B, 1678-1688, 1voy:B, 1678-1688, 1vp0:B, 1678-1688
GAAGACCAC
1z58:2, 2682-2692
GACGGAGAU
3bbo:A, 2242-2252
GGCUCAACC
1voq:A, 831-841, 1vos:A, 831-841, 1vov:A, 831-841, 1vox:A, 831-841, 1voz:A, 831-841
GGGUCUCCU
1n36:A, 814-824, 2v46:A, 814-824, 2v48:A, 814-824
GGUAAUGGC
1fka:A, 249-259
GUCGGACAU
2i2t:B, 2250-2260, 2i2v:B, 2250-2260, 2qam:B, 2250-2260, 2qao:B, 2250-2260, 2qba:B, 2250-2260, 2qbc:B, 2250-2260, 2qov:B, 2250-2260, 2qox:B, 2250-2260, 2qoz:B, 2250-2260, 2qp1:B, 2250-2260, 2vhm:B, 2250-2260, 2vhn:B, 2250-2260, 3df2:B, 2250-2260, 3df4:B, 2250-2260
GUUGGAAAU
1p9x:0, 2170-2180, 1pnu:0, 2239-2249, 1pny:0, 2239-2249, 1xbp:0, 2195-2205, 1y69:0, 2195-2205, 2aar:0, 2195-2205, 2d3o:0, 2216-2226, 2o43:A, 2195-2205, 3cf5:X, 2106-2116, 3dll:X, 2106-2116