Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(008)-Hairpin cluster 224 (cutoff=1.0 Å)
Cluster size 34 structure(s)
Representative structure 1nwx:0 (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence NNGHVABN
Cluster members
AGGAGACU
1grz:B, 137-146
CCGCAAGG
2f4v:A, 868-877
CCGCGAGG
1i94:A, 1005-1014, 1i95:A, 1005-1014, 2uxd:A, 981-990, 2v47:A, 2725-2734, 2v49:A, 2725-2734
CGGCAACG
1n36:A, 1240-1249
CGGUAACG
2a2e:A, 318-327
CUGACACG
1nkw:0, 2246-2255, 1nwx:0, 2246-2255, 1nwy:0, 2246-2255, 1ond:0, 2245-2254, 1z58:2, 2225-2234
GCGAAAGC
1i97:A, 1144-1153, 1yl4:A, 1141-1150
GCGCAAGC
1yl4:A, 368-377, 2jl5:A, 368-377, 2jl7:A, 368-377
GGGAAACU
1grz:A, 52-61, 1m5k:B, 72-81, 1m5o:B, 72-81, 1m5p:B, 72-81, 1m5v:B, 72-81
GUGAAAGC
1n33:A, 984-993, 2f4v:A, 984-993
UAGCAAUG
1nkw:0, 2742-2751, 1nwx:0, 2742-2751, 1nwy:0, 2742-2751, 1ond:0, 2741-2750, 2o45:A, 2727-2736, 2ogo:0, 2741-2750
UCGUAAGA
1xbp:0, 131-140, 1z58:2, 131-140