Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(007)-Hairpin cluster 1773 (cutoff=3.0 Å)
Cluster size 62 structure(s)
Representative structure 3epl:F (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence NNBNNDH
Cluster members
AAUGGUA
2ake:B, 13-21, 2azx:C, 13-21, 2azx:D, 13-21, 2dr2:B, 13-21
AGCGGAA
1gax:C, 13-21, 1gax:D, 13-21, 1ivs:C, 13-21, 1ivs:D, 13-21
AGUGGAA
1yfg:A, 13-21
AGUGGUA
3eph:E, 12-20, 3eph:F, 12-20, 3epj:E, 12-20, 3epj:F, 12-20, 3epk:E, 12-20, 3epk:F, 12-20, 3epl:E, 12-20, 3epl:F, 12-20
CACUAUU
2fey:A, 20-28, 2h2x:A, 7-15
CCGUAAA
1u8d:A, 45-53, 1y27:X, 46-54, 2b57:A, 44-52, 2ees:A, 45-53, 2eet:A, 45-53, 2eeu:A, 45-53, 2eev:A, 45-53, 2eew:A, 45-53, 2g9c:A, 45-53
CCUUAAA
1y26:X, 47-55
CUCAUAA
2csx:C, 32-40, 2ct8:C, 32-40, 2ct8:D, 32-40
CUCUAGA
2du6:D, 30-38
CUGAAGA
1lux:A, 5-13
CUGCAGA
2du3:D, 30-38, 2du4:C, 30-38
CUGUCAC
1c0a:B, 32-40, 1efw:C, 32-40, 1efw:D, 32-40
CUUCAGA
2du5:D, 30-38
GAGAAAA
3bbo:A, 1451-1459
NUGAAAA
2i82:E, 7-15, 2i82:F, 7-15, 2i82:G, 7-15, 2i82:H, 7-15
UCCUCGC
1ato:A, 6-14
UUCGUAA
1qf6:B, 31-39
UUCGUGU
1kog:I, 14-22, 1kog:J, 14-22, 1kog:K, 14-22, 1kog:L, 14-22, 1kog:M, 14-22, 1kog:N, 14-22, 1kog:O, 14-22, 1kog:P, 14-22
UUGAGGU
2nr0:F, 30-38
UUGUCGC
1asy:R, 31-39, 1asy:S, 31-39, 1asz:R, 31-39, 1asz:S, 31-39, 1il2:C, 31-39, 1il2:D, 30-38