Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(007)-Hairpin cluster 1199 (cutoff=2.5 Å)
Cluster size 274 structure(s)
Representative structure 2nz4:R (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence NNNNNNN
Cluster members
AACCAUC
1bj2:B, 6-14, 2bj2:B, 6-14
AGCUCCA
1e95:A, 6-14
CUUGAUG
1ffk:0, 2255-2263, 1ffz:A, 281-289, 1fg0:A, 281-289, 1jj2:0, 2305-2313, 1k73:A, 2305-2313, 1k8a:A, 2305-2313, 1k9m:A, 2305-2313, 1kc8:A, 2305-2313, 1kd1:A, 2305-2313, 1kqs:0, 2305-2313, 1m1k:A, 2305-2313, 1m90:A, 2305-2313, 1n8r:A, 2305-2313, 1nji:A, 2305-2313, 1q7y:A, 2305-2313, 1q81:A, 2305-2313, 1q82:A, 2305-2313, 1q86:A, 2305-2313, 1qvf:0, 2305-2313, 1qvg:0, 2305-2313, 1s1i:3, 2622-2630, 1s72:0, 2305-2313, 1vq4:0, 2305-2313, 1vq5:0, 2305-2313, 1vq6:0, 2305-2313, 1vq7:0, 2305-2313, 1vq8:0, 2305-2313, 1vq9:0, 2305-2313, 1vqk:0, 2305-2313, 1vql:0, 2305-2313, 1vqm:0, 2305-2313, 1vqn:0, 2305-2313, 1vqo:0, 2305-2313, 1vqp:0, 2305-2313, 1w2b:0, 2305-2313, 1yhq:0, 2305-2313, 1yi2:0, 2305-2313, 1yij:0, 2305-2313, 1yit:0, 2305-2313, 1yj9:0, 2305-2313, 1yjn:0, 2305-2313, 1yjw:0, 2305-2313, 2otj:0, 2305-2313, 2otl:0, 2305-2313, 2qa4:0, 2310-2318, 2qex:0, 2305-2313, 3cc2:0, 2305-2313, 3cc4:0, 2305-2313, 3cc7:0, 2305-2313, 3cce:0, 2305-2313, 3ccj:0, 2305-2313, 3ccl:0, 2305-2313, 3ccm:0, 2305-2313, 3ccq:0, 2305-2313, 3ccr:0, 2305-2313, 3ccs:0, 2305-2313, 3ccu:0, 2305-2313, 3ccv:0, 2305-2313, 3cd6:0, 2305-2313, 3cma:0, 2305-2313, 3cme:0, 2305-2313, 3cpw:0, 2305-2313
GAUAUGA
1vs6:B, 87-95, 1vs8:B, 87-95, 2aw4:B, 87-95, 2awb:B, 87-95, 2gya:0, 71-79, 2i2t:B, 87-95, 2i2v:B, 87-95, 2j28:B, 87-95, 2qam:B, 87-95, 2qao:B, 87-95, 2qba:B, 87-95, 2qbc:B, 87-95, 2qbe:B, 87-95, 2qbg:B, 87-95, 2qbi:B, 87-95, 2qbk:B, 87-95, 2qov:B, 87-95, 2qox:B, 87-95, 2qoz:B, 87-95, 2qp1:B, 87-95, 2z4l:B, 87-95, 2z4n:B, 87-95, 3bbx:B, 87-95, 3bo0:D, 9-17, 3bo1:D, 9-17, 3df2:B, 87-95, 3df4:B, 87-95
GCACGGA
1ffk:0, 74-82, 1jj2:0, 74-82, 1k73:A, 74-82, 1k8a:A, 74-82, 1k9m:A, 74-82, 1kc8:A, 74-82, 1kd1:A, 74-82, 1kqs:0, 74-82, 1m1k:A, 74-82, 1m90:A, 74-82, 1n8r:A, 74-82, 1nji:A, 74-82, 1q7y:A, 74-82, 1q81:A, 74-82, 1q82:A, 74-82, 1q86:A, 74-82, 1qvf:0, 74-82, 1qvg:0, 74-82, 1s1i:3, 74-82, 1s72:0, 74-82, 1vq4:0, 74-82, 1vq5:0, 74-82, 1vq6:0, 74-82, 1vq7:0, 74-82, 1vq8:0, 74-82, 1vq9:0, 74-82, 1vqk:0, 74-82, 1vql:0, 74-82, 1vqm:0, 74-82, 1vqn:0, 74-82, 1vqo:0, 74-82, 1vqp:0, 74-82, 1w2b:0, 74-82, 1yhq:0, 74-82, 1yi2:0, 74-82, 1yij:0, 74-82, 1yit:0, 74-82, 1yj9:0, 74-82, 1yjn:0, 74-82, 1yjw:0, 74-82, 2otj:0, 74-82, 2otl:0, 74-82, 2qa4:0, 74-82, 2qex:0, 74-82, 3cc2:0, 74-82, 3cc4:0, 74-82, 3cc7:0, 74-82, 3cce:0, 74-82, 3ccj:0, 74-82, 3ccl:0, 74-82, 3ccm:0, 74-82, 3ccq:0, 74-82, 3ccr:0, 74-82, 3ccs:0, 74-82, 3ccu:0, 74-82, 3ccv:0, 74-82, 3cd6:0, 74-82, 3cma:0, 74-82, 3cme:0, 74-82, 3cpw:0, 74-82, 3dkn:E, 4-12
GCAUCGA
1ffk:0, 407-415, 1jj2:0, 408-416, 1k73:A, 408-416, 1k8a:A, 408-416, 1k9m:A, 408-416, 1kc8:A, 408-416, 1kd1:A, 408-416, 1kqs:0, 408-416, 1m1k:A, 408-416, 1m90:A, 408-416, 1n8r:A, 408-416, 1nji:A, 408-416, 1q7y:A, 408-416, 1q81:A, 408-416, 1q82:A, 408-416, 1q86:A, 408-416, 1qvf:0, 408-416, 1qvg:0, 408-416, 1s1i:3, 407-415, 1s72:0, 408-416, 1vq4:0, 408-416, 1vq5:0, 408-416, 1vq6:0, 408-416, 1vq7:0, 408-416, 1vq8:0, 408-416, 1vq9:0, 408-416, 1vqk:0, 408-416, 1vql:0, 408-416, 1vqm:0, 408-416, 1vqn:0, 408-416, 1vqo:0, 408-416, 1vqp:0, 408-416, 1w2b:0, 408-416, 1yhq:0, 408-416, 1yi2:0, 408-416, 1yij:0, 408-416, 1yit:0, 408-416, 1yj9:0, 408-416, 1yjn:0, 408-416, 1yjw:0, 408-416, 2otj:0, 408-416, 2otl:0, 408-416, 2qa4:0, 408-416, 2qex:0, 408-416, 3cc2:0, 408-416, 3cc4:0, 408-416, 3cc7:0, 408-416, 3cce:0, 408-416, 3ccj:0, 408-416, 3ccl:0, 408-416, 3ccm:0, 408-416, 3ccq:0, 408-416, 3ccr:0, 408-416, 3ccs:0, 408-416, 3ccu:0, 408-416, 3ccv:0, 408-416, 3cd6:0, 408-416, 3cma:0, 408-416, 3cme:0, 408-416, 3cpw:0, 408-416
GGUAGCG
1vsa:w, 86-94, 1vsp:w, 86-94, 1yl3:A, 86-94, 2b66:A, 86-94, 2b9n:A, 86-94, 2b9p:A, 86-94, 2hgj:A, 86-94, 2hgq:A, 86-94, 2hgu:A, 86-94, 2j01:A, 81-89, 2j03:A, 81-89, 2jl6:A, 81-89, 2jl8:A, 81-89, 2v47:A, 81-89, 2v49:A, 81-89, 3d5b:A, 81-89, 3d5d:A, 81-89
UCCUCCC
3d0u:A, 90-98, 3d0x:A, 90-98, 3dig:X, 93-101, 3dil:A, 93-101, 3dim:A, 93-101, 3dio:X, 93-101, 3diq:A, 93-101, 3dir:A, 93-101, 3dis:A, 93-101, 3dix:A, 93-101, 3diy:A, 93-101, 3diz:A, 93-101, 3dj0:A, 93-101, 3dj2:A, 93-101
UGAAAAG
1c2w:B, 1281-1289
UGAUCCU
2hgi:A, 9-17, 2hgp:A, 9-17
UUCAUCA
2nz4:P, 71-79, 2nz4:Q, 71-79, 2nz4:R, 71-79, 2nz4:S, 71-79
UUCCUGC
2gcs:B, 56-64, 2gcv:B, 56-64, 2h0s:B, 56-64, 2h0w:B, 56-64, 2h0x:B, 56-64, 2h0z:B, 56-64, 2ho6:B, 56-64, 2ho7:B, 56-64, 2z74:B, 56-64, 2z75:B, 56-64, 3b4b:B, 56-64
UUGCAAA
1gid:A, 64-72, 1gid:B, 64-72, 1grz:A, 71-79, 1grz:B, 71-79, 1hr2:A, 64-72, 1hr2:B, 65-73, 1l8v:A, 64-72, 1l8v:B, 64-72, 1x8w:B, 71-79, 1x8w:C, 71-79, 1x8w:D, 71-79, 2r8s:R, 65-73