Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(007)-Hairpin cluster 1034 (cutoff=1.5 Å)
Cluster size 515 structure(s)
Representative structure 2fmt:C (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence NMVVNNN
Cluster members
AUCAGUA
1ffk:0, 1902-1910, 1jj2:0, 1952-1960, 1k73:A, 1952-1960, 1k8a:A, 1952-1960, 1k9m:A, 1952-1960, 1kc8:A, 1952-1960, 1kd1:A, 1952-1960, 1kqs:0, 1952-1960, 1m1k:A, 1952-1960, 1m90:A, 1952-1960, 1n8r:A, 1952-1960, 1nji:A, 1952-1960, 1q7y:A, 1952-1960, 1q81:A, 1952-1960, 1q82:A, 1952-1960, 1q86:A, 1952-1960, 1qvf:0, 1952-1960, 1qvg:0, 1952-1960, 1s1i:3, 2138-2146, 1s72:0, 1952-1960, 1vq4:0, 1952-1960, 1vq5:0, 1952-1960, 1vq6:0, 1952-1960, 1vq7:0, 1952-1960, 1vq8:0, 1952-1960, 1vq9:0, 1952-1960, 1vqk:0, 1952-1960, 1vql:0, 1952-1960, 1vqm:0, 1952-1960, 1vqn:0, 1952-1960, 1vqo:0, 1952-1960, 1vqp:0, 1952-1960, 1w2b:0, 1952-1960, 1yhq:0, 1952-1960, 1yi2:0, 1952-1960, 1yij:0, 1952-1960, 1yit:0, 1952-1960, 1yj9:0, 1952-1960, 1yjn:0, 1952-1960, 1yjw:0, 1952-1960, 2otj:0, 1952-1960, 2otl:0, 1952-1960, 2qex:0, 1952-1960, 3cc2:0, 1952-1960, 3cc4:0, 1952-1960, 3cc7:0, 1952-1960, 3cce:0, 1952-1960, 3ccj:0, 1952-1960, 3ccl:0, 1952-1960, 3ccm:0, 1952-1960, 3ccq:0, 1952-1960, 3ccr:0, 1952-1960, 3ccs:0, 1952-1960, 3ccu:0, 1952-1960, 3ccv:0, 1952-1960, 3cd6:0, 1952-1960, 3cma:0, 1952-1960, 3cme:0, 1952-1960, 3cpw:0, 1952-1960
AUCGAAA
1yfg:A, 52-60
CUCAUAA
2fmt:C, 32-40, 2fmt:D, 32-40, 2i2p:W, 5-13, 2i2u:W, 5-13, 2j00:V, 32-40, 2j02:V, 32-40, 3cw5:A, 32-40, 3cw6:A, 32-40, 3deg:B, 32-40
GUAACGC
2a2e:A, 96-104
GUAACGG
1vs5:A, 255-263, 1vs7:A, 255-263, 2avy:A, 255-263, 2aw7:A, 255-263, 2gy9:A, 237-245, 2gyb:A, 237-245, 2i2p:A, 255-263, 2i2u:A, 255-263, 2qal:A, 255-263, 2qan:A, 255-263, 2qb9:A, 255-263, 2qbb:A, 255-263, 2qbd:A, 255-263, 2qbf:A, 255-263, 2qbh:A, 255-263, 2qbj:A, 255-263, 2qou:A, 255-263, 2qow:A, 255-263, 2qoy:A, 255-263, 2qp0:A, 255-263, 2vho:A, 255-263, 2vhp:A, 255-263, 2z4k:A, 255-263, 2z4m:A, 255-263, 3df1:A, 255-263, 3df3:A, 255-263
GUAAGUU
1njm:0, 1866-1874, 1njn:0, 1866-1874, 1njo:0, 1866-1874, 1njp:0, 1866-1874, 1nkw:0, 1866-1874, 1nwx:0, 1866-1874, 1nwy:0, 1866-1874, 1ond:0, 1865-1873, 1pnu:0, 1891-1899, 1pny:0, 1891-1899, 1sm1:0, 1866-1874, 1vsa:w, 1949-1957, 1xbp:0, 1866-1874, 1y69:0, 1866-1874, 2aar:0, 1866-1874, 2gya:0, 1832-1840, 2gyc:0, 1832-1840, 2o44:A, 1866-1874, 3dll:X, 1827-1835
GUAAUGG
1fjg:A, 250-258, 1hnw:A, 250-258, 1hnx:A, 250-258, 1hnz:A, 250-258, 1hr0:A, 250-258, 1i94:A, 253-261, 1i95:A, 253-261, 1i96:A, 253-261, 1i97:A, 253-261, 1ibk:A, 250-258, 1ibl:A, 250-258, 1ibm:A, 250-258, 1j5e:A, 250-258, 1n32:A, 250-258, 1n33:A, 250-258, 1n34:A, 250-258, 1n36:A, 250-258, 1pns:A, 254-262, 1pnx:A, 254-262, 1s1h:A, 255-263, 1xmo:A, 250-258, 1xmq:A, 250-258, 1xnq:A, 250-258, 1xnr:A, 250-258, 1yl4:A, 250-258, 2b64:A, 250-258, 2b9m:A, 250-258, 2b9o:A, 250-258, 2e5l:A, 251-259, 2f4v:A, 250-258, 2hgi:A, 250-258, 2hgp:A, 250-258, 2hgr:A, 250-258, 2hhh:A, 250-258, 2j00:A, 250-258, 2j02:A, 250-258, 2jl5:A, 250-258, 2jl7:A, 250-258, 2uu9:A, 250-258, 2uua:A, 250-258, 2uub:A, 250-258, 2uuc:A, 250-258, 2uxb:A, 250-258, 2uxc:A, 250-258, 2uxd:A, 234-242, 2v46:A, 250-258, 2v48:A, 250-258, 2vqe:A, 250-258, 2vqf:A, 250-258, 3d5a:A, 250-258, 3d5c:A, 250-258
UGAAAAG
1vs6:B, 1265-1273, 1vs8:B, 1265-1273, 2aw4:B, 1265-1273, 2awb:B, 1265-1273, 2gya:0, 1205-1213, 2gyc:0, 1205-1213, 2i2t:B, 1265-1273, 2i2v:B, 1265-1273, 2j28:B, 1265-1273, 2qam:B, 1265-1273, 2qao:B, 1265-1273, 2qba:B, 1265-1273, 2qbc:B, 1265-1273, 2qbe:B, 1265-1273, 2qbg:B, 1265-1273, 2qbi:B, 1265-1273, 2qbk:B, 1265-1273, 2qov:B, 1265-1273, 2qox:B, 1265-1273, 2qoz:B, 1265-1273, 2qp1:B, 1265-1273, 2vhm:B, 1265-1273, 2vhn:B, 1265-1273, 2z4l:B, 1265-1273, 2z4n:B, 1265-1273, 3bbx:B, 1346-1354, 3df2:B, 1265-1273, 3df4:B, 1265-1273
UGACAGC
2vhn:B, 327-335
UGAGAAC
1ffk:0, 1309-1317, 1jj2:0, 1356-1364, 1k73:A, 1356-1364, 1k8a:A, 1356-1364, 1k9m:A, 1356-1364, 1kc8:A, 1356-1364, 1kd1:A, 1356-1364, 1kqs:0, 1356-1364, 1m1k:A, 1356-1364, 1m90:A, 1356-1364, 1n8r:A, 1356-1364, 1nji:A, 1356-1364, 1q7y:A, 1356-1364, 1q81:A, 1356-1364, 1q82:A, 1356-1364, 1q86:A, 1356-1364, 1qvf:0, 1356-1364, 1qvg:0, 1356-1364, 1s1i:3, 1467-1475, 1s72:0, 1356-1364, 1vq4:0, 1356-1364, 1vq5:0, 1356-1364, 1vq6:0, 1356-1364, 1vq7:0, 1356-1364, 1vq8:0, 1356-1364, 1vq9:0, 1356-1364, 1vqk:0, 1356-1364, 1vql:0, 1356-1364, 1vqm:0, 1356-1364, 1vqn:0, 1356-1364, 1vqo:0, 1356-1364, 1vqp:0, 1356-1364, 1w2b:0, 1356-1364, 1yhq:0, 1356-1364, 1yi2:0, 1356-1364, 1yij:0, 1356-1364, 1yit:0, 1356-1364, 1yj9:0, 1356-1364, 1yjn:0, 1356-1364, 1yjw:0, 1356-1364, 2j37:Z, 54-62, 2otj:0, 1356-1364, 2otl:0, 1356-1364, 2qa4:0, 1361-1369, 2qex:0, 1356-1364, 3cc2:0, 1356-1364, 3cc4:0, 1356-1364, 3cc7:0, 1356-1364, 3cce:0, 1356-1364, 3ccj:0, 1356-1364, 3ccl:0, 1356-1364, 3ccm:0, 1356-1364, 3ccq:0, 1356-1364, 3ccr:0, 1356-1364, 3ccs:0, 1356-1364, 3ccu:0, 1356-1364, 3ccv:0, 1356-1364, 3cd6:0, 1356-1364, 3cma:0, 1356-1364, 3cme:0, 1356-1364, 3cpw:0, 1356-1364
UGAGAAU
1j5a:A, 1236-1244, 1jzx:A, 1236-1244, 1jzy:A, 1236-1244, 1jzz:A, 1236-1244, 1k01:A, 1236-1244, 1njm:0, 1228-1236, 1njn:0, 1228-1236, 1njo:0, 1228-1236, 1njp:0, 1228-1236, 1nkw:0, 1228-1236, 1nwx:0, 1228-1236, 1nwy:0, 1228-1236, 1ond:0, 1228-1236, 1p9x:0, 1204-1212, 1pnu:0, 1244-1252, 1pny:0, 1244-1252, 1sm1:0, 1228-1236, 1vor:B, 1244-1252, 1vou:B, 1244-1252, 1vow:B, 1244-1252, 1voy:B, 1244-1252, 1vp0:B, 1244-1252, 1vsa:w, 1306-1314, 1vsp:w, 1306-1314, 1y69:0, 1228-1236, 1yl3:A, 1305-1313, 2aar:0, 1228-1236, 2b66:A, 1305-1313, 2b9n:A, 1305-1313, 2b9p:A, 1305-1313, 2d3o:0, 1228-1236, 2hgj:A, 1305-1313, 2hgq:A, 1305-1313, 2hgu:A, 1305-1313, 2j01:A, 1231-1239, 2j03:A, 1231-1239, 2jl6:A, 1310-1318, 2jl8:A, 1310-1318, 2o43:A, 1228-1236, 2o44:A, 1228-1236, 2ogm:0, 1228-1236, 2ogn:0, 1228-1236, 2ogo:0, 1227-1235, 2v47:A, 1231-1239, 2v49:A, 1231-1239, 2zjp:X, 1206-1214, 2zjq:X, 1206-1214, 2zjr:X, 1203-1211, 3bbo:A, 1247-1255, 3cf5:X, 1206-1214, 3d5b:A, 1301-1309, 3d5d:A, 1301-1309, 3dll:X, 1206-1214
UGAGAGU
3bwp:A, 28-36, 3eog:A, 28-36, 3eoh:A, 28-36
UUCAAAU
1j1u:B, 54-62, 2fmt:C, 54-62, 2fmt:D, 54-62, 2hgi:C, 53-61, 2hgr:C, 53-61, 2j00:V, 54-62, 2j02:V, 54-62, 2qnh:z, 54-62, 3cw5:A, 54-62, 3cw6:A, 54-62, 3d5a:Y, 54-62, 3d5a:Z, 54-62, 3d5c:Y, 54-62, 3d5c:Z, 54-62, 3deg:B, 54-62
UUCAAGU
1f7u:B, 53-61, 1f7v:B, 53-61, 1ffy:T, 54-62, 1fir:A, 53-61, 1gax:C, 52-60, 1gax:D, 52-60, 1ivs:C, 52-60, 1ivs:D, 52-60, 1j2b:C, 54-62, 1qu2:T, 54-62, 1qu3:T, 54-62, 2bte:B, 58-66, 2bte:E, 58-66, 2byt:B, 58-66, 2byt:E, 58-66, 2nqp:F, 60-68, 2nr0:E, 66-74, 2nr0:F, 58-66, 2nr0:G, 55-63, 2nre:F, 46-54, 2v0g:F, 59-67
UUCAAUU
1asy:R, 52-60, 1asy:S, 52-60, 1asz:R, 52-60, 1asz:S, 52-60, 1gix:D, 51-59, 1il2:C, 52-60, 1il2:D, 51-59, 1jgo:D, 51-59, 1jgp:D, 51-59, 1jgq:D, 51-59, 2om7:M, 51-59, 2tra:A, 52-60, 3tra:A, 52-60, 486d:A, 55-63, 486d:E, 52-60
UUCAGAU
1h4q:T, 51-59, 1h4s:T, 51-59
UUCGAAU
1euq:B, 49-57, 1euy:B, 50-58, 1exd:B, 50-58, 1gtr:B, 51-59, 1gts:B, 51-59, 1h3e:B, 63-71, 1o0b:B, 51-59, 1o0c:B, 51-59, 1qrs:B, 51-59, 1qrt:B, 51-59, 1qru:B, 51-59, 1qtq:B, 51-59, 1ser:T, 53-61, 1wz2:C, 65-73, 1wz2:D, 65-73, 1zjw:B, 51-59, 2ake:B, 52-60, 2azx:C, 52-60, 2azx:D, 52-60, 2der:C, 53-61, 2der:D, 51-59, 2det:C, 53-61, 2deu:C, 53-61, 2deu:D, 53-61, 2dr2:B, 52-60, 2du3:D, 52-60, 2du4:C, 52-60, 2du5:D, 52-60, 2du6:D, 52-60, 2rd2:B, 51-59, 2re8:B, 51-59
UUCGACU
1b23:R, 51-59, 1qf6:B, 53-61, 1u0b:A, 51-59, 2czj:B, 43-51, 2czj:F, 43-51, 2d6f:E, 52-60, 2d6f:F, 52-60, 2dlc:Y, 60-68
UUCGAGC
2fk6:R, 36-44
UUCGAGU
1c0a:B, 54-62, 1efw:C, 54-62, 1efw:D, 54-62, 2csx:C, 54-62, 2csx:D, 54-62, 2ct8:C, 54-62, 2ct8:D, 54-62
UUCGAUC
1ehz:A, 53-61, 1evv:A, 53-61, 1fcw:A, 53-61, 1fcw:B, 53-61, 1fcw:C, 53-61, 1fcw:D, 53-61, 1fcw:E, 53-61, 1gix:B, 53-61, 1gix:C, 53-61, 1i9v:A, 53-61, 1jgo:B, 53-61, 1jgo:C, 53-61, 1jgp:B, 53-61, 1jgp:C, 53-61, 1jgq:B, 53-61, 1jgq:C, 53-61, 1mj1:C, 53-61, 1mj1:D, 53-61, 1ml5:B, 53-61, 1ob2:B, 53-61, 1ob5:B, 53-61, 1ob5:D, 53-61, 1ob5:F, 53-61, 1pns:V, 53-61, 1pns:W, 53-61, 1sz1:E, 53-61, 1sz1:F, 53-61, 1tn2:A, 53-61, 1tra:A, 53-61, 1ttt:D, 53-61, 1ttt:E, 53-61, 1ttt:F, 53-61, 1yl4:C, 53-61, 1zo1:F, 53-61, 1zo3:A, 53-61, 1zo3:B, 53-61, 2b64:W, 53-61, 2b9m:W, 53-61, 2b9o:W, 53-61, 2gy9:U, 53-61, 2gy9:V, 53-61, 2gy9:W, 53-61, 2gyb:U, 53-61, 2gyb:V, 53-61, 2gyb:W, 53-61, 2k4c:A, 53-61, 2ow8:0, 53-61, 2qnh:2, 53-61, 3deg:A, 53-61, 3eph:E, 51-59, 3eph:F, 51-59, 3epj:E, 51-59, 3epk:E, 51-59, 3epk:F, 51-59, 3epl:E, 51-59, 3epl:F, 51-59, 486d:C, 53-61, 4tna:A, 53-61, 4tra:A, 53-61, 6tna:A, 53-61
UUCGAUU
1g59:B, 52-60, 1g59:D, 52-60, 1n77:C, 52-60, 1n77:D, 52-60, 1n78:C, 52-60, 1n78:D, 52-60, 1p6v:B, 33-41, 1vfg:C, 12-20, 1vfg:D, 12-20, 2cv0:C, 52-60, 2cv0:D, 52-60, 2cv1:C, 52-60, 2cv1:D, 52-60, 2cv2:C, 52-60, 2cv2:D, 52-60, 2dr5:B, 12-20, 2dr7:B, 12-20, 2dr8:B, 12-20, 2dr9:B, 12-20, 2dra:B, 12-20, 2drb:B, 12-20, 2dvi:B, 12-20, 2dxi:C, 52-60, 2dxi:D, 52-60, 2hgp:C, 53-61, 2hgp:D, 53-61, 2hgr:D, 53-61, 2jl5:V, 53-61, 2jl7:V, 53-61, 2ow8:z, 53-61, 2zh1:B, 12-20, 2zh2:B, 12-20, 2zh3:B, 12-20, 2zh4:B, 12-20, 2zh5:B, 12-20, 2zh6:B, 12-20, 2zh7:B, 12-20, 2zh8:B, 12-20, 2zh9:B, 12-20, 2zha:B, 12-20, 2zhb:B, 12-20, 3bbv:z, 53-61
UUGAAAA
2v46:V, 5-13