Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(007)-Hairpin cluster 53 (cutoff=1.0 Å)
Cluster size 93 structure(s)
Representative structure 1ffk:0 (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence NUNANWW
Cluster members
AUCAGUA
1ffk:0, 1902-1910, 1jj2:0, 1952-1960, 1k73:A, 1952-1960, 1k8a:A, 1952-1960, 1k9m:A, 1952-1960, 1kc8:A, 1952-1960, 1kd1:A, 1952-1960, 1kqs:0, 1952-1960, 1m1k:A, 1952-1960, 1m90:A, 1952-1960, 1n8r:A, 1952-1960, 1nji:A, 1952-1960, 1q7y:A, 1952-1960, 1q81:A, 1952-1960, 1q82:A, 1952-1960, 1q86:A, 1952-1960, 1qvf:0, 1952-1960, 1qvg:0, 1952-1960, 1s1i:3, 2138-2146, 1s72:0, 1952-1960, 1vq4:0, 1952-1960, 1vq5:0, 1952-1960, 1vq6:0, 1952-1960, 1vq7:0, 1952-1960, 1vq8:0, 1952-1960, 1vq9:0, 1952-1960, 1vqk:0, 1952-1960, 1vql:0, 1952-1960, 1vqm:0, 1952-1960, 1vqn:0, 1952-1960, 1vqo:0, 1952-1960, 1vqp:0, 1952-1960, 1w2b:0, 1952-1960, 1yhq:0, 1952-1960, 1yi2:0, 1952-1960, 1yij:0, 1952-1960, 1yit:0, 1952-1960, 1yj9:0, 1952-1960, 1yjn:0, 1952-1960, 1yjw:0, 1952-1960, 2otj:0, 1952-1960, 2otl:0, 1952-1960, 2qex:0, 1952-1960, 3cc2:0, 1952-1960, 3cc4:0, 1952-1960, 3cc7:0, 1952-1960, 3cce:0, 1952-1960, 3ccj:0, 1952-1960, 3ccl:0, 1952-1960, 3ccm:0, 1952-1960, 3ccq:0, 1952-1960, 3ccr:0, 1952-1960, 3ccs:0, 1952-1960, 3ccu:0, 1952-1960, 3ccv:0, 1952-1960, 3cd6:0, 1952-1960, 3cma:0, 1952-1960, 3cme:0, 1952-1960, 3cpw:0, 1952-1960
CUCAUAA
2i2p:W, 5-13, 2i2u:W, 5-13, 3d5a:Y, 32-40, 3d5c:Y, 32-40
CUUACAA
2uu9:Y, 3-11
GUAAGUU
1njm:0, 1866-1874, 1njn:0, 1866-1874, 1njo:0, 1866-1874, 1njp:0, 1866-1874, 1nkw:0, 1866-1874, 1nwx:0, 1866-1874, 1nwy:0, 1866-1874, 1ond:0, 1865-1873, 1pnu:0, 1891-1899, 1pny:0, 1891-1899, 1sm1:0, 1866-1874, 1vsa:w, 1949-1957, 1vsp:w, 1949-1957, 1xbp:0, 1866-1874, 1y69:0, 1866-1874, 1yl3:A, 1949-1957, 2aar:0, 1866-1874, 2b66:A, 1949-1957, 2b9n:A, 1949-1957, 2b9p:A, 1949-1957, 2gya:0, 1832-1840, 2gyc:0, 1832-1840, 2o43:A, 1866-1874, 2o44:A, 1866-1874, 3dll:X, 1827-1835
UUGAAAA
1ibl:Y, 4-12, 2hgp:C, 31-39, 2jl5:V, 31-39, 2v48:V, 5-13