RNA Loop Modeling

Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.

(5-4)-Internal loop cluster 810 (cutoff=1.0 Å with sequence identity)
Cluster size	52 structure(s)
Representative structure	2qao:B (&rarr PDB)
Downloads	Representative structure (PDB) (MC-Annotate) Member list
Consensus sequence	CAGUA-GAAC
Cluster members
CAGUA-GAAC 1vs6:B, 235-262, 1vs6:B, 245-253, 1vs8:B, 235-262, 1vs8:B, 245-253, 2aw4:B, 235-262, 2aw4:B, 245-253, 2awb:B, 235-262, 2awb:B, 245-253, 2gya:0, 190-215, 2gya:0, 199-207, 2gyc:0, 190-215, 2gyc:0, 199-207, 2i2t:B, 235-262, 2i2t:B, 245-253, 2i2v:B, 235-262, 2i2v:B, 245-253, 2j28:B, 235-262, 2j28:B, 245-253, 2qam:B, 235-262, 2qam:B, 245-253, 2qao:B, 235-262, 2qao:B, 245-253, 2qba:B, 235-262, 2qba:B, 245-253, 2qbc:B, 235-262, 2qbc:B, 245-253, 2qbe:B, 235-262, 2qbe:B, 245-253, 2qbg:B, 235-262, 2qbg:B, 245-253, 2qbi:B, 235-262, 2qbi:B, 245-253, 2qbk:B, 235-262, 2qbk:B, 245-253, 2qov:B, 235-262, 2qov:B, 245-253, 2qox:B, 235-262, 2qox:B, 245-253, 2qoz:B, 235-262, 2qoz:B, 245-253, 2qp1:B, 235-262, 2qp1:B, 245-253, 2z4l:B, 235-262, 2z4l:B, 245-253, 2z4n:B, 235-262, 2z4n:B, 245-253, 3bbx:B, 235-262, 3bbx:B, 245-253, 3df2:B, 235-262, 3df2:B, 245-253, 3df4:B, 235-262, 3df4:B, 245-253