Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(3-3)-Internal loop cluster 4060 (cutoff=1.5 Å)
Cluster size 130 structure(s)
Representative structure 3ccs:0 (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence BUH-GUA
Cluster members
CUC-GUA
1njm:0, 2578-2616, 1njm:0, 2583-2611, 1njn:0, 2578-2616, 1njn:0, 2583-2611, 1njo:0, 2578-2616, 1njo:0, 2583-2611, 1njp:0, 2578-2616, 1njp:0, 2583-2611, 1nkw:0, 2576-2618, 1nkw:0, 2583-2611, 1nwx:0, 2576-2618, 1nwx:0, 2583-2611, 1nwy:0, 2576-2618, 1nwy:0, 2583-2611, 1ond:0, 2575-2617, 1ond:0, 2582-2610, 1p9x:0, 2552-2592, 1pnu:0, 2622-2660, 1pnu:0, 2627-2655, 1pny:0, 2622-2660, 1pny:0, 2627-2655, 1sm1:0, 2578-2616, 1sm1:0, 2583-2611, 1vor:B, 2620-2662, 1vor:B, 2627-2655, 1vou:B, 2620-2662, 1vou:B, 2627-2655, 1vow:B, 2620-2662, 1vow:B, 2627-2655, 1voy:B, 2620-2662, 1voy:B, 2627-2655, 1vp0:B, 2620-2662, 1vp0:B, 2627-2655, 1xbp:0, 2578-2616
GUA-GUA
1q81:A, 2585-2625, 1q81:A, 2592-2618, 1vq4:0, 2585-2625, 1vq4:0, 2592-2618, 1vq5:0, 2585-2625, 1vq5:0, 2592-2618, 1vq7:0, 2585-2625, 1vq7:0, 2592-2618, 1vq8:0, 2585-2625, 1vq8:0, 2592-2618, 1w2b:0, 2585-2625, 1w2b:0, 2592-2618, 1yj9:0, 2585-2625, 1yj9:0, 2592-2618, 2qex:0, 2585-2625, 2qex:0, 2592-2618, 3bbo:A, 2623-2665, 3ccj:0, 2585-2625, 3ccj:0, 2592-2618, 3ccr:0, 2585-2625, 3ccr:0, 2592-2618, 3ccs:0, 2585-2625, 3ccs:0, 2592-2618, 3cd6:0, 2585-2625, 3cd6:0, 2592-2618
GUU-GUA
1vs6:B, 2631-2672, 1vs6:B, 2638-2665, 1vs8:B, 2631-2672, 1vs8:B, 2638-2665, 2aw4:B, 2631-2672, 2aw4:B, 2638-2665, 2awb:B, 2631-2672, 2awb:B, 2638-2665, 2gya:0, 2543-2582, 2gyc:0, 2543-2582, 2i2t:B, 2631-2672, 2i2t:B, 2638-2665, 2i2v:B, 2631-2672, 2i2v:B, 2638-2665, 2j28:B, 2631-2672, 2j28:B, 2638-2665, 2qam:B, 2631-2672, 2qam:B, 2638-2665, 2qao:B, 2631-2672, 2qao:B, 2638-2665, 2qba:B, 2631-2672, 2qba:B, 2638-2665, 2qbc:B, 2631-2672, 2qbc:B, 2638-2665, 2qbe:B, 2631-2672, 2qbe:B, 2638-2665, 2qbg:B, 2631-2672, 2qbg:B, 2638-2665, 2qbi:B, 2631-2672, 2qbi:B, 2638-2665, 2qbk:B, 2631-2672, 2qbk:B, 2638-2665, 2qov:B, 2631-2672, 2qov:B, 2638-2665, 2qox:B, 2631-2672, 2qox:B, 2638-2665, 2qoz:B, 2631-2672, 2qoz:B, 2638-2665, 2qp1:B, 2631-2672, 2qp1:B, 2638-2665, 2z4l:B, 2631-2672, 2z4l:B, 2638-2665, 2z4n:B, 2631-2672, 2z4n:B, 2638-2665, 3bbx:B, 2914-2955, 3bbx:B, 2921-2948, 3df2:B, 2631-2672, 3df2:B, 2638-2665, 3df4:B, 2631-2672, 3df4:B, 2638-2665
UUC-GUA
1vsa:w, 2674-2716, 1vsa:w, 2681-2709, 1vsp:w, 2674-2716, 1vsp:w, 2681-2709, 1yl3:A, 2660-2702, 1yl3:A, 2667-2695, 2j01:A, 2562-2604, 2j01:A, 2569-2597, 2j03:A, 2562-2604, 2j03:A, 2569-2597, 2jl6:A, 2641-2683, 2jl6:A, 2648-2676, 2jl8:A, 2641-2683, 2jl8:A, 2648-2676, 2v47:A, 2559-2597, 2v49:A, 2559-2597, 2v49:A, 2564-2592, 3d5b:A, 2669-2711, 3d5b:A, 2676-2704, 3d5d:A, 2669-2711, 3d5d:A, 2676-2704