RNA Loop Modeling

Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.

(3-3)-Internal loop cluster 2925 (cutoff=1.0 Å with sequence identity)
Cluster size	48 structure(s)
Representative structure	2qba:B (&rarr PDB)
Downloads	Representative structure (PDB) (MC-Annotate) Member list
Consensus sequence	GGA-GAG
Cluster members
GGA-GAG 1vs6:B, 1702-1726, 1vs6:B, 1708-1720, 1vs8:B, 1702-1726, 1vs8:B, 1708-1720, 2aw4:B, 1702-1726, 2aw4:B, 1708-1720, 2awb:B, 1702-1726, 2awb:B, 1708-1720, 2i2t:B, 1702-1726, 2i2t:B, 1708-1720, 2i2v:B, 1702-1726, 2i2v:B, 1708-1720, 2j28:B, 1702-1726, 2j28:B, 1708-1720, 2qam:B, 1702-1726, 2qam:B, 1708-1720, 2qao:B, 1702-1726, 2qao:B, 1708-1720, 2qba:B, 1702-1726, 2qba:B, 1708-1720, 2qbc:B, 1702-1726, 2qbc:B, 1708-1720, 2qbe:B, 1702-1726, 2qbe:B, 1708-1720, 2qbg:B, 1702-1726, 2qbg:B, 1708-1720, 2qbi:B, 1702-1726, 2qbi:B, 1708-1720, 2qbk:B, 1702-1726, 2qbk:B, 1708-1720, 2qov:B, 1702-1726, 2qov:B, 1708-1720, 2qox:B, 1702-1726, 2qox:B, 1708-1720, 2qoz:B, 1702-1726, 2qoz:B, 1708-1720, 2qp1:B, 1702-1726, 2qp1:B, 1708-1720, 2z4l:B, 1702-1726, 2z4l:B, 1708-1720, 2z4n:B, 1702-1726, 2z4n:B, 1708-1720, 3bbx:B, 1789-1813, 3bbx:B, 1795-1807, 3df2:B, 1702-1726, 3df2:B, 1708-1720, 3df4:B, 1702-1726, 3df4:B, 1708-1720