RNA Loop Modeling

Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.

(3-3)-Internal loop cluster 3006 (cutoff=1.0 Å)
Cluster size	57 structure(s)
Representative structure	2qbe:B (&rarr PDB)
Downloads	Representative structure (PDB) (MC-Annotate) Member list
Consensus sequence	UAA-GAW
Cluster members
UAA-GAA 1vs6:B, 1400-1566, 1vs8:B, 1400-1566, 2aw4:B, 1400-1566, 2awb:B, 1400-1566, 2i2t:B, 1400-1566, 2i2v:B, 1400-1566, 2j28:B, 1400-1566, 2qam:B, 1400-1566, 2qao:B, 1400-1566, 2qba:B, 1400-1566, 2qbc:B, 1400-1566, 2qbe:B, 1400-1566, 2qbg:B, 1400-1566, 2qbi:B, 1400-1566, 2qbk:B, 1400-1566, 2vhm:B, 1400-1566, 2z4l:B, 1400-1566, 2z4n:B, 1400-1566, 3df2:B, 1400-1566 UAA-GAU 1vs6:B, 1334-1365, 1vs8:B, 1334-1365, 1vsp:w, 1441-1607, 2aar:0, 1297-1328, 2aar:0, 1302-1323, 2aw4:B, 1334-1365, 2awb:B, 1334-1365, 2i2t:B, 1334-1365, 2i2v:B, 1334-1365, 2j01:A, 1366-1524, 2j03:A, 1366-1524, 2j28:B, 1334-1365, 2o43:A, 1297-1328, 2o45:A, 1294-1325, 2ogm:0, 1297-1328, 2ogn:0, 1297-1328, 2ogo:0, 1296-1327, 2qam:B, 1334-1365, 2qao:B, 1334-1365, 2qba:B, 1334-1365, 2qbc:B, 1334-1365, 2qbe:B, 1334-1365, 2qbg:B, 1334-1365, 2qbi:B, 1334-1365, 2qbk:B, 1334-1365, 2qov:B, 1334-1365, 2qox:B, 1334-1365, 2qoz:B, 1334-1365, 2qp1:B, 1334-1365, 2z4l:B, 1334-1365, 2z4n:B, 1334-1365, 2zjp:X, 1275-1306, 2zjq:X, 1275-1306, 2zjr:X, 1272-1303, 3bbx:B, 1415-1446, 3cf5:X, 1275-1306, 3df2:B, 1334-1365, 3df4:B, 1334-1365