Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(3-3)-Internal loop cluster 2783 (cutoff=1.0 Å)
Cluster size 283 structure(s)
Representative structure 2qa4:0 (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence GAD-UAA
Cluster members
GAA-UAA
1j5a:A, 949-1112, 1j5a:A, 955-1106, 1jzx:A, 949-1112, 1jzx:A, 955-1106, 1jzy:A, 949-1112, 1jzy:A, 955-1106, 1jzz:A, 949-1112, 1jzz:A, 955-1106, 1k01:A, 949-1112, 1k01:A, 955-1106, 1njm:0, 941-1104, 1njm:0, 947-1098, 1njn:0, 941-1104, 1njn:0, 947-1098, 1njo:0, 941-1104, 1njo:0, 947-1098, 1njp:0, 941-1104, 1njp:0, 947-1098, 1nkw:0, 941-1104, 1nkw:0, 947-1098, 1nwx:0, 941-1104, 1nwx:0, 947-1098, 1nwy:0, 941-1104, 1nwy:0, 947-1098, 1ond:0, 941-1104, 1ond:0, 947-1098, 1p9x:0, 918-1081, 1pnu:0, 957-1120, 1pnu:0, 963-1114, 1pny:0, 957-1120, 1pny:0, 963-1114, 1sm1:0, 941-1104, 1sm1:0, 947-1098, 1vs6:B, 980-1143, 1vs6:B, 986-1137, 1vs8:B, 980-1143, 1vs8:B, 986-1137, 1vsa:w, 1021-1184, 1vsa:w, 1027-1178, 1vsp:w, 1021-1184, 1vsp:w, 1027-1178, 1xbp:0, 941-1104, 1xbp:0, 947-1098, 1y69:0, 941-1104, 1y69:0, 947-1098, 1yl3:A, 1020-1184, 1yl3:A, 1026-1178, 1z58:2, 932-1095, 1z58:2, 938-1089, 2aar:0, 941-1104, 2aar:0, 947-1098, 2aw4:B, 980-1143, 2aw4:B, 986-1137, 2awb:B, 980-1143, 2awb:B, 986-1137, 2b66:A, 1020-1184, 2b9n:A, 1020-1184, 2b9n:A, 1026-1178, 2b9p:A, 1020-1184, 2d3o:0, 941-1104, 2d3o:0, 947-1098, 2gya:0, 919-1089, 2gya:0, 929-1079, 2hgj:A, 1020-1184, 2hgj:A, 1374-1405, 2hgq:A, 1020-1184, 2hgq:A, 1374-1405, 2hgu:A, 1020-1184, 2hgu:A, 1026-1178, 2hgu:A, 1374-1405, 2i2t:B, 980-1143, 2i2t:B, 986-1137, 2i2v:B, 980-1143, 2i2v:B, 986-1137, 2j01:A, 1004-1103, 2j01:A, 1300-1331, 2j01:A, 998-1109, 2j03:A, 1004-1103, 2j03:A, 1300-1331, 2j03:A, 998-1109, 2j28:B, 980-1143, 2j28:B, 986-1137, 2jl6:A, 1025-1188, 2jl6:A, 1031-1182, 2jl6:A, 1379-1410, 2jl8:A, 1025-1188, 2jl8:A, 1031-1182, 2jl8:A, 1379-1410, 2o43:A, 941-1104, 2o43:A, 947-1098, 2o44:A, 941-1104, 2o45:A, 938-1101, 2o45:A, 944-1095, 2ogm:0, 941-1104, 2ogm:0, 947-1098, 2ogn:0, 941-1104, 2ogn:0, 947-1098, 2ogo:0, 940-1103, 2ogo:0, 946-1097, 2qam:B, 980-1143, 2qam:B, 986-1137, 2qao:B, 980-1143, 2qao:B, 986-1137, 2qba:B, 980-1143, 2qba:B, 986-1137, 2qbc:B, 980-1143, 2qbc:B, 986-1137, 2qbe:B, 980-1143, 2qbe:B, 986-1137, 2qbg:B, 980-1143, 2qbg:B, 986-1137, 2qbi:B, 980-1143, 2qbi:B, 986-1137, 2qbk:B, 980-1143, 2qbk:B, 986-1137, 2qov:B, 1400-1566, 2qov:B, 980-1143, 2qov:B, 986-1137, 2qox:B, 1400-1566, 2qox:B, 980-1143, 2qox:B, 986-1137, 2qoz:B, 1400-1566, 2qoz:B, 980-1143, 2qoz:B, 986-1137, 2qp1:B, 1400-1566, 2qp1:B, 980-1143, 2qp1:B, 986-1137, 2vhm:B, 980-1143, 2vhn:B, 980-1143, 2z4l:B, 980-1143, 2z4l:B, 986-1137, 2z4n:B, 980-1143, 2z4n:B, 986-1137, 2zjp:X, 919-1082, 2zjp:X, 925-1076, 2zjq:X, 919-1082, 2zjq:X, 925-1076, 2zjr:X, 916-1079, 2zjr:X, 922-1073, 3bbx:B, 1058-1224, 3bbx:B, 1064-1218, 3cf5:X, 919-1082, 3cf5:X, 925-1076, 3d5b:A, 1017-1178, 3d5b:A, 1022-1173, 3d5b:A, 1370-1401, 3d5d:A, 1017-1178, 3d5d:A, 1022-1173, 3d5d:A, 1370-1401, 3df2:B, 980-1143, 3df2:B, 986-1137, 3df4:B, 1400-1566, 3df4:B, 980-1143, 3df4:B, 986-1137, 3dll:X, 919-1082, 3dll:X, 925-1076
GAG-UAA
1ffk:0, 1054-1189, 1ffk:0, 1064-1179, 1jj2:0, 1058-1236, 1jj2:0, 1068-1226, 1k73:A, 1058-1236, 1k73:A, 1068-1226, 1k8a:A, 1058-1236, 1k8a:A, 1068-1226, 1k9m:A, 1058-1236, 1k9m:A, 1068-1226, 1kc8:A, 1058-1236, 1kc8:A, 1068-1226, 1kd1:A, 1058-1236, 1kd1:A, 1068-1226, 1kqs:0, 1058-1236, 1kqs:0, 1068-1226, 1m1k:A, 1058-1236, 1m1k:A, 1068-1226, 1m90:A, 1058-1236, 1m90:A, 1068-1226, 1n8r:A, 1058-1236, 1n8r:A, 1068-1226, 1nji:A, 1058-1236, 1nji:A, 1068-1226, 1q7y:A, 1058-1236, 1q7y:A, 1068-1226, 1q81:A, 1058-1236, 1q81:A, 1068-1226, 1q82:A, 1058-1236, 1q82:A, 1068-1226, 1q86:A, 1058-1236, 1q86:A, 1068-1226, 1qvf:0, 1058-1236, 1qvf:0, 1068-1226, 1qvg:0, 1058-1236, 1qvg:0, 1068-1226, 1s1i:3, 1154-1341, 1s1i:3, 1164-1331, 1s72:0, 1058-1236, 1s72:0, 1068-1226, 1vq4:0, 1058-1236, 1vq4:0, 1068-1226, 1vq5:0, 1058-1236, 1vq5:0, 1068-1226, 1vq6:0, 1058-1236, 1vq6:0, 1068-1226, 1vq7:0, 1058-1236, 1vq7:0, 1068-1226, 1vq8:0, 1058-1236, 1vq8:0, 1068-1226, 1vq9:0, 1058-1236, 1vq9:0, 1068-1226, 1vqk:0, 1058-1236, 1vqk:0, 1068-1226, 1vql:0, 1058-1236, 1vql:0, 1068-1226, 1vqm:0, 1058-1236, 1vqm:0, 1068-1226, 1vqn:0, 1058-1236, 1vqn:0, 1068-1226, 1vqo:0, 1058-1236, 1vqo:0, 1068-1226, 1vqp:0, 1058-1236, 1vqp:0, 1068-1226, 1w2b:0, 1058-1236, 1w2b:0, 1068-1226, 1yhq:0, 1058-1236, 1yhq:0, 1068-1226, 1yi2:0, 1058-1236, 1yi2:0, 1068-1226, 1yij:0, 1058-1236, 1yij:0, 1068-1226, 1yit:0, 1058-1236, 1yit:0, 1068-1226, 1yj9:0, 1058-1236, 1yj9:0, 1068-1226, 1yjn:0, 1058-1236, 1yjn:0, 1068-1226, 1yjw:0, 1058-1236, 1yjw:0, 1068-1226, 2otj:0, 1058-1236, 2otj:0, 1068-1226, 2otl:0, 1058-1236, 2otl:0, 1068-1226, 2qa4:0, 1057-1241, 2qa4:0, 1067-1231, 2qex:0, 1058-1236, 2qex:0, 1068-1226, 3cc2:0, 1058-1236, 3cc2:0, 1068-1226, 3cc4:0, 1058-1236, 3cc4:0, 1068-1226, 3cc7:0, 1058-1236, 3cc7:0, 1068-1226, 3cce:0, 1058-1236, 3cce:0, 1068-1226, 3ccj:0, 1058-1236, 3ccj:0, 1068-1226, 3ccl:0, 1058-1236, 3ccl:0, 1068-1226, 3ccm:0, 1058-1236, 3ccm:0, 1068-1226, 3ccq:0, 1058-1236, 3ccq:0, 1068-1226, 3ccr:0, 1058-1236, 3ccr:0, 1068-1226, 3ccs:0, 1058-1236, 3ccs:0, 1068-1226, 3ccu:0, 1058-1236, 3ccu:0, 1068-1226, 3ccv:0, 1058-1236, 3ccv:0, 1068-1226, 3cd6:0, 1058-1236, 3cd6:0, 1068-1226, 3cma:0, 1058-1236, 3cma:0, 1068-1226, 3cme:0, 1058-1236, 3cme:0, 1068-1226, 3cpw:0, 1058-1236, 3cpw:0, 1068-1226
GAU-UAA
1y69:0, 1297-1328, 2d3o:0, 1297-1328, 2jl6:A, 1445-1603, 2jl8:A, 1445-1603, 3d5b:A, 1436-1602, 3d5d:A, 1436-1602, 3dll:X, 1275-1306