RNA Loop Modeling

Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.

(3-3)-Internal loop cluster 2897 (cutoff=0.5 Å)
Cluster size	77 structure(s)
Representative structure	2qao:B (&rarr PDB)
Downloads	Representative structure (PDB) (MC-Annotate) Member list
Consensus sequence	GAA-UAA
Cluster members
GAA-UAA 1vs6:B, 980-1143, 1vs6:B, 986-1137, 1vs8:B, 980-1143, 1vs8:B, 986-1137, 2aar:0, 941-1104, 2aar:0, 947-1098, 2aw4:B, 980-1143, 2aw4:B, 986-1137, 2awb:B, 980-1143, 2awb:B, 986-1137, 2i2t:B, 980-1143, 2i2t:B, 986-1137, 2i2v:B, 980-1143, 2i2v:B, 986-1137, 2j01:A, 1004-1103, 2j01:A, 998-1109, 2j03:A, 1004-1103, 2j03:A, 998-1109, 2j28:B, 980-1143, 2j28:B, 986-1137, 2jl6:A, 1025-1188, 2jl6:A, 1031-1182, 2jl8:A, 1025-1188, 2jl8:A, 1031-1182, 2o44:A, 941-1104, 2ogm:0, 941-1104, 2ogm:0, 947-1098, 2ogn:0, 941-1104, 2ogn:0, 947-1098, 2ogo:0, 940-1103, 2ogo:0, 946-1097, 2qam:B, 980-1143, 2qam:B, 986-1137, 2qao:B, 980-1143, 2qao:B, 986-1137, 2qba:B, 980-1143, 2qba:B, 986-1137, 2qbc:B, 980-1143, 2qbc:B, 986-1137, 2qbe:B, 980-1143, 2qbe:B, 986-1137, 2qbg:B, 980-1143, 2qbg:B, 986-1137, 2qbi:B, 980-1143, 2qbi:B, 986-1137, 2qbk:B, 980-1143, 2qbk:B, 986-1137, 2qov:B, 980-1143, 2qov:B, 986-1137, 2qox:B, 980-1143, 2qox:B, 986-1137, 2qoz:B, 980-1143, 2qoz:B, 986-1137, 2qp1:B, 980-1143, 2qp1:B, 986-1137, 2vhm:B, 980-1143, 2vhn:B, 980-1143, 2z4l:B, 980-1143, 2z4l:B, 986-1137, 2z4n:B, 980-1143, 2z4n:B, 986-1137, 2zjr:X, 916-1079, 2zjr:X, 922-1073, 3bbx:B, 1058-1224, 3bbx:B, 1064-1218, 3cf5:X, 919-1082, 3cf5:X, 925-1076, 3d5b:A, 1017-1178, 3d5b:A, 1022-1173, 3d5d:A, 1017-1178, 3d5d:A, 1022-1173, 3df2:B, 980-1143, 3df2:B, 986-1137, 3df4:B, 980-1143, 3df4:B, 986-1137, 3dll:X, 919-1082, 3dll:X, 925-1076