Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(3-2)-Internal loop cluster 1014 (cutoff=2.0 Å)
Cluster size 281 structure(s)
Representative structure 3cf5:X (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence NDN-ND
Cluster members
AAA-AA
1pnu:0, 1802-1824, 1pnu:0, 1809-1816
AAC-GA
2v3c:M, 7-41
AAC-UA
1j5a:A, 1391-1515, 1j5a:A, 1396-1509, 1jzx:A, 1391-1515, 1jzx:A, 1396-1509, 1jzy:A, 1391-1515, 1jzy:A, 1396-1509, 1jzz:A, 1391-1515, 1jzz:A, 1396-1509, 1k01:A, 1391-1515, 1k01:A, 1396-1509, 1p9x:0, 1359-1483, 1p9x:0, 1364-1477, 2aar:0, 1383-1507, 2aar:0, 1388-1501, 2o43:A, 1383-1507, 2o43:A, 1388-1501, 2ogm:0, 1383-1507, 2ogm:0, 1388-1501, 2ogn:0, 1383-1507, 2ogn:0, 1388-1501, 2zjp:X, 1361-1485, 2zjp:X, 1366-1479, 2zjq:X, 1361-1485, 2zjq:X, 1366-1479, 2zjr:X, 1358-1482, 2zjr:X, 1363-1476, 3cf5:X, 1361-1485, 3cf5:X, 1366-1479, 3dll:X, 1361-1485, 3dll:X, 1366-1479
AAU-UA
1vs6:B, 1419-1541, 1vs6:B, 1424-1535, 1vs8:B, 1419-1541, 1vs8:B, 1424-1535, 2aw4:B, 1419-1541, 2aw4:B, 1424-1535, 2awb:B, 1419-1541, 2awb:B, 1424-1535, 2i2t:B, 1419-1541, 2i2t:B, 1424-1535, 2i2v:B, 1419-1541, 2i2v:B, 1424-1535, 2j28:B, 1419-1541, 2j28:B, 1424-1535, 2qam:B, 1419-1541, 2qam:B, 1424-1535, 2qao:B, 1419-1541, 2qao:B, 1424-1535, 2qba:B, 1419-1541, 2qba:B, 1424-1535, 2qbc:B, 1419-1541, 2qbc:B, 1424-1535, 2qbe:B, 1419-1541, 2qbe:B, 1424-1535, 2qbg:B, 1419-1541, 2qbg:B, 1424-1535, 2qbi:B, 1419-1541, 2qbi:B, 1424-1535, 2qbk:B, 1419-1541, 2qbk:B, 1424-1535, 2qov:B, 1419-1541, 2qov:B, 1424-1535, 2qox:B, 1419-1541, 2qox:B, 1424-1535, 2qoz:B, 1419-1541, 2qoz:B, 1424-1535, 2qp1:B, 1419-1541, 2qp1:B, 1424-1535, 2z4l:B, 1419-1541, 2z4l:B, 1424-1535, 2z4n:B, 1419-1541, 2z4n:B, 1424-1535, 3bbx:B, 1500-1622, 3bbx:B, 1505-1616, 3df2:B, 1419-1541, 3df2:B, 1424-1535, 3df4:B, 1419-1541, 3df4:B, 1424-1535
CUU-CG
1ffk:0, 2303-2344, 1fg0:A, 329-370, 1jj2:0, 2353-2394, 1k73:A, 2353-2394, 1k8a:A, 2353-2394, 1k9m:A, 2353-2394, 1kc8:A, 2353-2394, 1kd1:A, 2353-2394, 1kqs:0, 2353-2394, 1m1k:A, 2353-2394, 1m90:A, 2353-2394, 1n8r:A, 2353-2394, 1nji:A, 2353-2394, 1q7y:A, 2353-2394, 1q81:A, 2353-2394, 1q82:A, 2353-2394, 1q86:A, 2353-2394, 1qvf:0, 2353-2394, 1qvg:0, 2353-2394, 1s1i:3, 2670-2711, 1s72:0, 2353-2394, 1vq4:0, 2353-2394, 1vq5:0, 2353-2394, 1vq6:0, 2353-2394, 1vq7:0, 2353-2394, 1vq8:0, 2353-2394, 1vq9:0, 2353-2394, 1vqk:0, 2353-2394, 1vql:0, 2353-2394, 1vqm:0, 2353-2394, 1vqn:0, 2353-2394, 1vqo:0, 2353-2394, 1vqp:0, 2353-2394, 1yhq:0, 2353-2394, 1yi2:0, 2353-2394, 1yij:0, 2353-2394, 1yit:0, 2353-2394, 1yj9:0, 2353-2394, 1yjn:0, 2353-2394, 1yjw:0, 2353-2394, 2otj:0, 2353-2394, 2otl:0, 2353-2394, 2qa4:0, 2358-2399, 2qex:0, 2353-2394, 3cc2:0, 2353-2394, 3cc4:0, 2353-2394, 3cc7:0, 2353-2394, 3cce:0, 2353-2394, 3ccj:0, 2353-2394, 3ccl:0, 2353-2394, 3ccm:0, 2353-2394, 3ccq:0, 2353-2394, 3ccr:0, 2353-2394, 3ccs:0, 2353-2394, 3ccu:0, 2353-2394, 3ccv:0, 2353-2394, 3cd6:0, 2353-2394, 3cma:0, 2353-2394, 3cme:0, 2353-2394, 3cpw:0, 2353-2394
GAA-UA
1vs6:B, 1844-1866, 1vs6:B, 1851-1858, 1vs8:B, 1844-1866, 1vs8:B, 1851-1858, 1vsa:w, 1460-1582, 1vsa:w, 1465-1576, 1vsp:w, 1460-1582, 1vsp:w, 1465-1576, 2aw4:B, 1844-1866, 2aw4:B, 1851-1858, 2awb:B, 1844-1866, 2awb:B, 1851-1858, 2hgj:A, 1459-1582, 2hgj:A, 1464-1576, 2hgq:A, 1459-1582, 2hgq:A, 1464-1576, 2hgu:A, 1459-1582, 2hgu:A, 1464-1576, 2i2t:B, 1844-1866, 2i2t:B, 1851-1858, 2i2v:B, 1844-1866, 2i2v:B, 1851-1858, 2j01:A, 1385-1499, 2j01:A, 1390-1493, 2j03:A, 1385-1499, 2j03:A, 1390-1493, 2j28:B, 1844-1866, 2j28:B, 1851-1858, 2jl6:A, 1464-1578, 2jl6:A, 1469-1572, 2jl8:A, 1464-1578, 2jl8:A, 1469-1572, 2qam:B, 1844-1866, 2qam:B, 1851-1858, 2qao:B, 1844-1866, 2qao:B, 1851-1858, 2qba:B, 1844-1866, 2qba:B, 1851-1858, 2qbc:B, 1844-1866, 2qbc:B, 1851-1858, 2qbe:B, 1844-1866, 2qbe:B, 1851-1858, 2qbg:B, 1844-1866, 2qbg:B, 1851-1858, 2qbi:B, 1844-1866, 2qbi:B, 1851-1858, 2qbk:B, 1844-1866, 2qbk:B, 1851-1858, 2qov:B, 1844-1866, 2qov:B, 1851-1858, 2qox:B, 1844-1866, 2qox:B, 1851-1858, 2qoz:B, 1844-1866, 2qoz:B, 1851-1858, 2qp1:B, 1844-1866, 2qp1:B, 1851-1858, 2z4l:B, 1844-1866, 2z4l:B, 1851-1858, 2z4n:B, 1844-1866, 2z4n:B, 1851-1858, 3bbx:B, 1937-1959, 3bbx:B, 1944-1951, 3d5b:A, 1455-1577, 3d5b:A, 1460-1571, 3d5d:A, 1455-1577, 3d5d:A, 1460-1571, 3df2:B, 1844-1866, 3df2:B, 1851-1858, 3df4:B, 1844-1866, 3df4:B, 1851-1858
GGG-UA
1j5a:A, 2002-2143, 1jzx:A, 2002-2143, 1jzy:A, 2002-2143, 1jzz:A, 2002-2143, 1k01:A, 2002-2143, 1nkw:0, 1994-2135, 1nwx:0, 1994-2135, 1nwy:0, 1994-2135, 2d3o:0, 1994-2156, 2o43:A, 1994-2135, 2o45:A, 1991-2123
GUU-AU
2gya:0, 2317-2358
UAA-AG
1z43:A, 11-45, 1z43:A, 18-37
UAA-AU
3bwp:A, 309-333, 3bwp:A, 315-326, 3eog:A, 327-351, 3eog:A, 333-344, 3eoh:A, 325-351, 3eoh:A, 332-343
UAA-GU
1vs6:B, 2786-2825, 1vs8:B, 2786-2825, 2aw4:B, 2786-2825, 2awb:B, 2786-2825, 2i2t:B, 2786-2825, 2i2v:B, 2786-2825, 2j28:B, 2786-2825, 2qam:B, 2786-2825, 2qao:B, 2786-2825, 2qba:B, 2786-2825, 2qbc:B, 2786-2825, 2qbe:B, 2786-2825, 2qbg:B, 2786-2825, 2qbi:B, 2786-2825, 2qbk:B, 2786-2825, 2qov:B, 2786-2825, 2qox:B, 2786-2825, 2qoz:B, 2786-2825, 2qp1:B, 2786-2825, 2vhm:B, 2789-2822, 2vhn:B, 2789-2822, 2z4l:B, 2786-2825, 2z4n:B, 2786-2825, 3bbx:B, 3069-3108, 3df2:B, 2786-2825, 3df4:B, 2786-2825
UGA-CG
2o43:A, 35-407, 2o43:A, 39-402, 2ogm:0, 35-407, 2ogm:0, 39-402, 2zjr:X, 35-385, 2zjr:X, 39-380
UUU-GA
1vsa:w, 2445-2486, 1vsp:w, 2445-2486, 2i2t:B, 2402-2443, 2i2v:B, 2402-2443, 2j01:A, 2333-2374, 2j03:A, 2333-2374, 2jl6:A, 2412-2453, 2jl8:A, 2412-2453, 2om7:H, 1-42, 2qov:B, 2402-2443, 2qoz:B, 2402-2443, 2qp1:B, 2402-2443, 2zjp:X, 2258-2299, 2zjq:X, 2258-2299, 3cf5:X, 2258-2299, 3d5b:A, 2440-2481, 3d5d:A, 2440-2481, 3dll:X, 2258-2299