Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(3-2)-Internal loop cluster 135 (cutoff=2.0 Å)
Cluster size 66 structure(s)
Representative structure 1l8v:A (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence DAK-DD
Cluster members
AAA-AA
1gid:A, 9-107, 1gid:B, 9-107, 1grz:A, 16-114, 1grz:B, 16-114, 1l8v:A, 5-111, 1l8v:B, 5-111
GAA-GA
1ow9:A, 1-23, 1ow9:A, 8-17
GAA-GG
1vsp:w, 1493-1549, 1vsp:w, 1499-1544, 2j01:A, 1418-1475, 2j03:A, 1418-1475, 3d5b:A, 1488-1544, 3d5b:A, 1494-1539, 3d5d:A, 1488-1544, 3d5d:A, 1494-1539
GAA-UA
3d5b:A, 298-382, 3d5d:A, 298-382
UAA-AU
1gid:A, 119-150, 1gid:A, 125-145, 1gid:B, 119-150, 1gid:B, 125-145, 1grz:A, 125-157, 1grz:A, 132-151, 1grz:B, 125-157, 1grz:B, 132-151, 1hr2:A, 118-149, 1hr2:A, 124-144, 1hr2:B, 119-150, 1hr2:B, 125-145, 1kxk:A, 11-61, 1kxk:A, 19-54, 1l8v:A, 117-150, 1l8v:A, 124-144, 1l8v:B, 117-150, 1l8v:B, 124-144, 1u6b:B, 152-172, 1u6b:B, 158-167, 1u6b:B, 57-81, 1u6b:B, 62-77, 1x8w:A, 125-157, 1x8w:A, 132-151, 1x8w:C, 125-157, 1x8w:C, 132-151, 1x8w:D, 125-157, 1x8w:D, 132-151, 1zzn:B, 152-172, 1zzn:B, 158-167, 1zzn:B, 57-81, 1zzn:B, 62-77, 2r8s:R, 118-151, 2r8s:R, 125-145, 3bo2:B, 152-172, 3bo2:B, 158-167, 3bo2:B, 57-81, 3bo2:B, 62-77, 3bo3:B, 152-172, 3bo3:B, 158-167, 3bo3:B, 57-81, 3bo3:B, 62-77, 3bo4:B, 152-172, 3bo4:B, 158-167, 3bo4:B, 57-81, 3bo4:B, 62-77
UAC-AU
1nbs:B, 57-79, 1nbs:B, 64-73