Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(3-1)-Internal loop cluster 496 (cutoff=2.5 Å)
Cluster size 119 structure(s)
Representative structure 2o43:A (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence DRR-D
Cluster members
AAA-A
1vs6:B, 281-359, 1vs6:B, 295-343, 1vs8:B, 281-359, 1vs8:B, 295-343, 2aw4:B, 281-359, 2aw4:B, 295-343, 2awb:B, 281-359, 2awb:B, 295-343, 2i2t:B, 281-359, 2i2t:B, 295-343, 2i2v:B, 281-359, 2i2v:B, 295-343, 2j28:B, 281-359, 2j28:B, 295-343, 2qam:B, 281-359, 2qam:B, 295-343, 2qao:B, 281-359, 2qao:B, 295-343, 2qba:B, 281-359, 2qba:B, 295-343, 2qbc:B, 281-359, 2qbc:B, 295-343, 2qbe:B, 281-359, 2qbe:B, 295-343, 2qbg:B, 281-359, 2qbg:B, 295-343, 2qbi:B, 281-359, 2qbi:B, 295-343, 2qbk:B, 281-359, 2qbk:B, 295-343, 2qov:B, 281-359, 2qov:B, 295-343, 2qox:B, 281-359, 2qox:B, 295-343, 2qoz:B, 281-359, 2qoz:B, 295-343, 2qp1:B, 281-359, 2qp1:B, 295-343, 2z4l:B, 281-359, 2z4l:B, 295-343, 2z4n:B, 281-359, 2z4n:B, 295-343, 3bbx:B, 281-359, 3bbx:B, 295-343, 3df2:B, 281-359, 3df2:B, 295-343, 3df4:B, 281-359, 3df4:B, 295-343
AAG-U
1vor:B, 2456-2481, 1vor:B, 2459-2476, 1vou:B, 2456-2481, 1vou:B, 2459-2476, 1vow:B, 2456-2481, 1vow:B, 2459-2476, 1voy:B, 2456-2481, 1voy:B, 2459-2476, 1vp0:B, 2456-2481, 1vp0:B, 2459-2476, 1yl3:A, 2496-2521, 1yl3:A, 2499-2516, 2f88:A, 1-34, 2f88:A, 10-23, 2o43:A, 2412-2437, 2o43:A, 2415-2432
AGG-G
1n8x:A, 1-36, 1n8x:A, 9-26, 1osw:A, 1-22, 1osw:A, 6-15, 2d1b:A, 1-39, 2d1b:A, 8-30, 2d1b:B, 1-39, 2d1b:B, 8-30
GAA-A
2j01:A, 303-363, 2j01:A, 308-356, 2j03:A, 303-363, 2j03:A, 308-356, 2jl6:A, 303-363, 2jl6:A, 308-356, 2jl8:A, 303-363, 2jl8:A, 308-356, 3d5b:A, 310-370, 3d5b:A, 315-363, 3d5d:A, 310-370, 3d5d:A, 315-363
GGA-G
1m5l:A, 14-25, 1m5l:A, 9-32
UAA-G
2a64:A, 147-161, 2a64:A, 150-156
UGA-G
1njm:0, 1766-1819, 1njm:0, 1769-1814, 1njn:0, 1766-1819, 1njn:0, 1769-1814, 1njo:0, 1766-1819, 1njo:0, 1769-1814, 1njp:0, 1766-1819, 1njp:0, 1769-1814, 1nkw:0, 1766-1819, 1nkw:0, 1769-1814, 1nwx:0, 1766-1819, 1nwx:0, 1769-1814, 1nwy:0, 1766-1819, 1nwy:0, 1769-1814, 1ond:0, 1765-1818, 1ond:0, 1768-1813, 1pnu:0, 1782-1844, 1pnu:0, 1785-1839, 1pny:0, 1782-1844, 1pny:0, 1785-1839, 2d3o:0, 1766-1819, 2o43:A, 1766-1819, 2o43:A, 1769-1814, 2o45:A, 1763-1816, 2o45:A, 1766-1811, 2ogm:0, 1766-1819, 2ogm:0, 1769-1814, 3bbo:A, 1772-1838, 3bbo:A, 1775-1833, 3dll:X, 1744-1797, 3dll:X, 1747-1792