Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(2-3)-Internal loop cluster 954 (cutoff=1.5 Å)
Cluster size 197 structure(s)
Representative structure 2zjr:X (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence DW-DRN
Cluster members
AU-UAA
3bwp:A, 309-333, 3bwp:A, 315-326, 3eog:A, 327-351, 3eog:A, 333-344, 3eoh:A, 325-351, 3eoh:A, 332-343
GU-UAA
1vs6:B, 2786-2825, 1vs8:B, 2786-2825, 2aw4:B, 2786-2825, 2awb:B, 2786-2825, 2i2t:B, 2786-2825, 2i2v:B, 2786-2825, 2j28:B, 2786-2825, 2qam:B, 2786-2825, 2qao:B, 2786-2825, 2qba:B, 2786-2825, 2qbc:B, 2786-2825, 2qbe:B, 2786-2825, 2qbg:B, 2786-2825, 2qbi:B, 2786-2825, 2qbk:B, 2786-2825, 2qov:B, 2786-2825, 2qox:B, 2786-2825, 2qoz:B, 2786-2825, 2qp1:B, 2786-2825, 2vhm:B, 2789-2822, 2vhn:B, 2789-2822, 2z4l:B, 2786-2825, 2z4n:B, 2786-2825, 3bbx:B, 3069-3108, 3df2:B, 2786-2825, 3df4:B, 2786-2825
UA-AAC
1j5a:A, 1391-1515, 1j5a:A, 1396-1509, 1jzx:A, 1391-1515, 1jzx:A, 1396-1509, 1jzy:A, 1391-1515, 1jzy:A, 1396-1509, 1jzz:A, 1391-1515, 1jzz:A, 1396-1509, 1k01:A, 1391-1515, 1k01:A, 1396-1509, 1njm:0, 1383-1507, 1njm:0, 1388-1501, 1njn:0, 1383-1507, 1njn:0, 1388-1501, 1njo:0, 1383-1507, 1njo:0, 1388-1501, 1njp:0, 1383-1507, 1njp:0, 1388-1501, 1nkw:0, 1383-1507, 1nkw:0, 1388-1501, 1nwx:0, 1383-1507, 1nwx:0, 1388-1501, 1nwy:0, 1383-1507, 1nwy:0, 1388-1501, 1ond:0, 1383-1506, 1ond:0, 1388-1500, 1p9x:0, 1359-1483, 1p9x:0, 1364-1477, 1pnu:0, 1399-1523, 1pnu:0, 1404-1517, 1pny:0, 1399-1523, 1pny:0, 1404-1517, 1sm1:0, 1383-1507, 1sm1:0, 1388-1501, 1xbp:0, 1383-1507, 1xbp:0, 1388-1501, 1y69:0, 1383-1507, 1y69:0, 1388-1501, 2aar:0, 1383-1507, 2aar:0, 1388-1501, 2o43:A, 1383-1507, 2o43:A, 1388-1501, 2o45:A, 1380-1504, 2o45:A, 1385-1498, 2ogm:0, 1383-1507, 2ogm:0, 1388-1501, 2ogn:0, 1383-1507, 2ogn:0, 1388-1501, 2ogo:0, 1382-1506, 2ogo:0, 1387-1500, 2zjp:X, 1361-1485, 2zjp:X, 1366-1479, 2zjq:X, 1361-1485, 2zjq:X, 1366-1479, 2zjr:X, 1358-1482, 2zjr:X, 1363-1476, 3cf5:X, 1361-1485, 3cf5:X, 1366-1479, 3dll:X, 1361-1485, 3dll:X, 1366-1479
UA-AAU
1vs6:B, 1419-1541, 1vs6:B, 1424-1535, 1vs8:B, 1419-1541, 1vs8:B, 1424-1535, 2aw4:B, 1419-1541, 2aw4:B, 1424-1535, 2awb:B, 1419-1541, 2awb:B, 1424-1535, 2i2t:B, 1419-1541, 2i2t:B, 1424-1535, 2i2v:B, 1419-1541, 2i2v:B, 1424-1535, 2j28:B, 1419-1541, 2j28:B, 1424-1535, 2qam:B, 1419-1541, 2qam:B, 1424-1535, 2qao:B, 1419-1541, 2qao:B, 1424-1535, 2qba:B, 1419-1541, 2qba:B, 1424-1535, 2qbc:B, 1419-1541, 2qbc:B, 1424-1535, 2qbe:B, 1419-1541, 2qbe:B, 1424-1535, 2qbg:B, 1419-1541, 2qbg:B, 1424-1535, 2qbi:B, 1419-1541, 2qbi:B, 1424-1535, 2qbk:B, 1419-1541, 2qbk:B, 1424-1535, 2qov:B, 1419-1541, 2qov:B, 1424-1535, 2qox:B, 1419-1541, 2qox:B, 1424-1535, 2qoz:B, 1419-1541, 2qoz:B, 1424-1535, 2qp1:B, 1419-1541, 2qp1:B, 1424-1535, 2z4l:B, 1419-1541, 2z4l:B, 1424-1535, 2z4n:B, 1419-1541, 2z4n:B, 1424-1535, 3bbx:B, 1500-1622, 3bbx:B, 1505-1616, 3df2:B, 1419-1541, 3df2:B, 1424-1535, 3df4:B, 1419-1541, 3df4:B, 1424-1535
UA-GAA
1vs6:B, 1844-1866, 1vs6:B, 1851-1858, 1vs8:B, 1844-1866, 1vs8:B, 1851-1858, 1vsp:w, 1460-1582, 1vsp:w, 1465-1576, 2aw4:B, 1844-1866, 2aw4:B, 1851-1858, 2awb:B, 1844-1866, 2awb:B, 1851-1858, 2hgj:A, 1459-1582, 2hgj:A, 1464-1576, 2hgq:A, 1459-1582, 2hgq:A, 1464-1576, 2hgu:A, 1459-1582, 2hgu:A, 1464-1576, 2j01:A, 1385-1499, 2j01:A, 1390-1493, 2j03:A, 1385-1499, 2j03:A, 1390-1493, 2j28:B, 1844-1866, 2j28:B, 1851-1858, 2jl6:A, 1464-1578, 2jl6:A, 1469-1572, 2jl8:A, 1464-1578, 2jl8:A, 1469-1572, 2qam:B, 1844-1866, 2qam:B, 1851-1858, 2qao:B, 1844-1866, 2qao:B, 1851-1858, 2qbe:B, 1844-1866, 2qbe:B, 1851-1858, 2qbg:B, 1844-1866, 2qbg:B, 1851-1858, 2qbi:B, 1844-1866, 2qbi:B, 1851-1858, 2qbk:B, 1844-1866, 2qbk:B, 1851-1858, 2qov:B, 1844-1866, 2qov:B, 1851-1858, 2qox:B, 1844-1866, 2qox:B, 1851-1858, 2qoz:B, 1844-1866, 2qoz:B, 1851-1858, 2qp1:B, 1844-1866, 2qp1:B, 1851-1858, 2z4l:B, 1844-1866, 2z4l:B, 1851-1858, 2z4n:B, 1844-1866, 2z4n:B, 1851-1858, 3bbx:B, 1937-1959, 3bbx:B, 1944-1951, 3d5b:A, 1455-1577, 3d5b:A, 1460-1571, 3d5d:A, 1455-1577, 3d5d:A, 1460-1571
UA-GGG
2o43:A, 1994-2135