Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(007)-Hairpin cluster 39 (cutoff=0.5 Å)
Cluster size 77 structure(s)
Representative structure 1f7u:B (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence UUCRANY
Cluster members
UUCAAAU
1j1u:B, 54-62, 2fmt:C, 54-62, 2j00:V, 54-62, 2j02:V, 54-62, 3cw5:A, 54-62, 3cw6:A, 54-62, 3d5a:Y, 54-62, 3d5c:Y, 54-62, 3deg:B, 54-62
UUCAAGU
1f7u:B, 53-61, 1f7v:B, 53-61, 1ffy:T, 54-62, 1fir:A, 53-61, 1qu2:T, 54-62, 2bte:E, 58-66, 2byt:E, 58-66, 2v0g:F, 59-67
UUCAAUU
1asy:R, 52-60, 1asy:S, 52-60, 1asz:R, 52-60, 1asz:S, 52-60, 1gix:D, 51-59, 1il2:C, 52-60, 1il2:D, 51-59, 1jgo:D, 51-59, 1jgp:D, 51-59, 1jgq:D, 51-59, 2om7:M, 51-59, 3tra:A, 52-60, 486d:A, 55-63, 486d:E, 52-60
UUCGAAU
1gtr:B, 51-59, 1gts:B, 51-59, 1h3e:B, 63-71, 1qrs:B, 51-59, 1qru:B, 51-59, 1qtq:B, 51-59, 1ser:T, 53-61, 1wz2:D, 65-73, 2azx:C, 52-60
UUCGACU
1b23:R, 51-59, 1qf6:B, 53-61, 1u0b:A, 51-59, 2dlc:Y, 60-68
UUCGAGC
2fk6:R, 36-44
UUCGAGU
1c0a:B, 54-62, 1efw:C, 54-62, 1efw:D, 54-62
UUCGAUC
1ehz:A, 53-61, 1evv:A, 53-61, 1gix:B, 53-61, 1gix:C, 53-61, 1i9v:A, 53-61, 1jgo:B, 53-61, 1jgo:C, 53-61, 1jgp:B, 53-61, 1jgp:C, 53-61, 1jgq:B, 53-61, 1jgq:C, 53-61, 1mj1:C, 53-61, 1mj1:D, 53-61, 1ml5:B, 53-61, 1pns:V, 53-61, 1pns:W, 53-61, 1sz1:E, 53-61, 1tn2:A, 53-61, 1tra:A, 53-61, 1zo1:F, 53-61, 1zo3:A, 53-61, 1zo3:B, 53-61, 2b64:W, 53-61, 2b9m:W, 53-61, 2b9o:W, 53-61, 3deg:A, 53-61, 486d:C, 53-61, 4tna:A, 53-61
UUCGAUU
2jl7:V, 53-61